Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | IGS56_RS02945 | Genome accession | NZ_AP022846 |
| Coordinates | 593511..594017 (+) | Length | 168 a.a. |
| NCBI ID | WP_071162873.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain TAMBA230 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 588511..599017
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGS56_RS02925 (JPHIA_05570) | - | 588621..588950 (-) | 330 | WP_071162877.1 | YbaB/EbfC family nucleoid-associated protein | - |
| IGS56_RS02930 (JPHIA_05580) | - | 589103..589948 (-) | 846 | WP_190811818.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| IGS56_RS02935 (JPHIA_05590) | - | 590021..592615 (-) | 2595 | WP_071162875.1 | penicillin-binding protein 1A | - |
| IGS56_RS02940 (JPHIA_05600) | comA | 592713..593510 (+) | 798 | WP_071162874.1 | competence protein ComA | Machinery gene |
| IGS56_RS02945 (JPHIA_05610) | comB | 593511..594017 (+) | 507 | WP_071162873.1 | competence protein ComB | Machinery gene |
| IGS56_RS02950 (JPHIA_05620) | comC | 594014..594535 (+) | 522 | WP_048951462.1 | competence protein ComC | Machinery gene |
| IGS56_RS02955 (JPHIA_05630) | comD | 594532..594945 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| IGS56_RS02960 (JPHIA_05640) | comE | 594955..596292 (+) | 1338 | WP_071162872.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| IGS56_RS02965 (JPHIA_05650) | - | 596305..596991 (+) | 687 | WP_071162871.1 | ComF family protein | - |
| IGS56_RS02970 (JPHIA_05660) | nfuA | 597067..597663 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| IGS56_RS02975 (JPHIA_05670) | nudC | 597731..598525 (+) | 795 | WP_071162870.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19766.73 Da Isoelectric Point: 8.5473
>NTDB_id=79407 IGS56_RS02945 WP_071162873.1 593511..594017(+) (comB) [Haemophilus influenzae strain TAMBA230]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKLFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSILNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKLFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSILNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=79407 IGS56_RS02945 WP_071162873.1 593511..594017(+) (comB) [Haemophilus influenzae strain TAMBA230]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGCCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTTGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCTCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGCCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTTGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCTCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
98.214 |
100 |
0.982 |
| comB | Haemophilus influenzae Rd KW20 |
98.214 |
100 |
0.982 |