Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PVV54_RS23740 Genome accession   NZ_CP118607
Coordinates   5293487..5294038 (-) Length   183 a.a.
NCBI ID   WP_274907563.1    Uniprot ID   -
Organism   Pseudomonas sp. PSKL.D1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5288487..5299038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVV54_RS23715 (PVV54_23715) - 5288656..5289441 (-) 786 WP_274907558.1 TSUP family transporter -
  PVV54_RS23720 (PVV54_23720) - 5289473..5290498 (-) 1026 WP_274907559.1 TauD/TfdA family dioxygenase -
  PVV54_RS23725 (PVV54_23725) - 5290924..5292318 (+) 1395 WP_274907560.1 PLP-dependent aminotransferase family protein -
  PVV54_RS23730 (PVV54_23730) - 5292872..5293138 (+) 267 WP_274907561.1 hypothetical protein -
  PVV54_RS23735 (PVV54_23735) - 5293135..5293407 (+) 273 WP_274907562.1 DUF3077 domain-containing protein -
  PVV54_RS23740 (PVV54_23740) ssb 5293487..5294038 (-) 552 WP_274907563.1 single-stranded DNA-binding protein Machinery gene
  PVV54_RS23745 (PVV54_23745) - 5294048..5295442 (-) 1395 WP_274907564.1 MFS transporter -
  PVV54_RS23750 (PVV54_23750) uvrA 5295572..5298406 (+) 2835 WP_274907565.1 excinuclease ABC subunit UvrA -
  PVV54_RS23755 (PVV54_23755) bfr 5298475..5298939 (-) 465 WP_274907566.1 bacterioferritin -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20230.32 Da        Isoelectric Point: 5.9286

>NTDB_id=793944 PVV54_RS23740 WP_274907563.1 5293487..5294038(-) (ssb) [Pseudomonas sp. PSKL.D1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGGQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=793944 PVV54_RS23740 WP_274907563.1 5293487..5294038(-) (ssb) [Pseudomonas sp. PSKL.D1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCAACCAGCGAGCAGTGGACCGACAAGCAGTCTGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATTGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATTGTCGACATCAACGGCAC
CATGCAACTGCTCGGCGGCCGTCCGCAGGGTCAGCAGCAGGGCGGTGATCCGTACAATCAGGGTGGTGGCAACTACAACC
AAGGTGGTGGTGGCCAGCAGCAGTACAACCAGGCTCCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCGCAGCGC
CCGGCGCCACAGCAGCCTGCACCGCAGCCGGCGGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.452

100

0.574
  ssb Glaesserella parasuis strain SC1401

49.474

100

0.514
  ssb Neisseria meningitidis MC58

47.568

100

0.481
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.481