Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PVT68_RS00410 Genome accession   NZ_CP118605
Coordinates   94240..94536 (+) Length   98 a.a.
NCBI ID   WP_280320603.1    Uniprot ID   -
Organism   Microbulbifer bruguierae strain H12     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 89240..99536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT68_RS00385 (PVT68_00385) rpsA 89465..91144 (+) 1680 WP_280320599.1 30S ribosomal protein S1 -
  PVT68_RS00390 (PVT68_00390) ihfB 91285..91593 (+) 309 WP_280320600.1 integration host factor subunit beta -
  PVT68_RS00395 (PVT68_00395) - 91671..91979 (+) 309 WP_280320601.1 LapA family protein -
  PVT68_RS00400 (PVT68_00400) lapB 91981..93171 (+) 1191 WP_280320602.1 lipopolysaccharide assembly protein LapB -
  PVT68_RS00405 (PVT68_00405) pyrF 93220..93936 (+) 717 WP_407666114.1 orotidine-5'-phosphate decarboxylase -
  PVT68_RS00410 (PVT68_00410) comEA/comE1 94240..94536 (+) 297 WP_280320603.1 ComEA family DNA-binding protein Machinery gene
  PVT68_RS00415 (PVT68_00415) - 94652..95593 (+) 942 WP_280320604.1 NAD(P)-dependent oxidoreductase -
  PVT68_RS00420 (PVT68_00420) - 95593..96510 (+) 918 WP_280320605.1 glycosyltransferase family 4 protein -
  PVT68_RS00425 (PVT68_00425) - 96679..98679 (+) 2001 WP_280320606.1 nucleoside-diphosphate sugar epimerase/dehydratase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10810.61 Da        Isoelectric Point: 4.6229

>NTDB_id=793899 PVT68_RS00410 WP_280320603.1 94240..94536(+) (comEA/comE1) [Microbulbifer bruguierae strain H12]
MKFFRIPLAALFAVSLLLVNVQLANAEEPVVQEQMLVNLNTATAEELSEVLVGVGSAKAELIVQYREEHGKFSSVEQLLE
VKGIGIATLEKNKDRMQL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=793899 PVT68_RS00410 WP_280320603.1 94240..94536(+) (comEA/comE1) [Microbulbifer bruguierae strain H12]
GTGAAATTTTTTCGTATCCCACTGGCGGCACTGTTTGCCGTTAGCCTGCTGCTGGTAAACGTCCAGCTAGCCAATGCCGA
GGAACCGGTTGTTCAGGAGCAAATGCTGGTCAACCTGAATACCGCGACTGCAGAAGAGCTGTCTGAAGTGTTGGTTGGTG
TCGGCTCTGCCAAGGCGGAGTTGATCGTGCAATACCGGGAAGAGCATGGAAAGTTTTCAAGTGTTGAGCAGCTGTTGGAA
GTCAAGGGGATAGGTATCGCCACCCTGGAAAAAAATAAGGATCGAATGCAGCTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

45.283

100

0.49
  comEA Vibrio cholerae C6706

48.78

83.673

0.408
  comEA Vibrio cholerae strain A1552

48.78

83.673

0.408
  comE1/comEA Haemophilus influenzae Rd KW20

66.102

60.204

0.398