Detailed information NTG0793796

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PWW26_RS03415
• Genome accession: NZ_CP118596
• Coordinates: 683128..683997 (-)
• Length: 289 a.a.
• NCBI ID: WP_274878547.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain fish10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 678128..688997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW26_RS03380	rpsP	679130..679378 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
PWW26_RS03385	rimM	679407..679955 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
PWW26_RS03390	trmD	679983..680726 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PWW26_RS03395	rplS	680768..681121 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
PWW26_RS03400	yacG	681488..681688 (-)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PWW26_RS03405	zapD	681745..682485 (-)	741	WP_274878546.1	cell division protein ZapD	-
PWW26_RS03410	coaE	682513..683127 (-)	615	WP_017817675.1	dephospho-CoA kinase	-
PWW26_RS03415	pilD	683128..683997 (-)	870	WP_274878547.1	A24 family peptidase	Machinery gene
PWW26_RS03420	pilC	684070..685293 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PWW26_RS03425	pilB	685327..687012 (-)	1686	WP_017817677.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWW26_RS03430	pilA	687013..687462 (-)	450	WP_050922072.1	pilin	Machinery gene
PWW26_RS03435	nadC	687727..688614 (-)	888	WP_274878548.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32478.70 Da
• Isoelectric Point: 7.8754

>NTDB_id=793796 PWW26_RS03415 WP_274878547.1 683128..683997(-) (pilD) [Vibrio harveyi strain fish10]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIAKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=793796 PWW26_RS03415 WP_274878547.1 683128..683997(-) (pilD) [Vibrio harveyi strain fish10]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGTGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTCCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTACCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCCTGTGAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGCAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436