Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWW26_RS02245 Genome accession   NZ_CP118596
Coordinates   473634..474173 (+) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 468634..479173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW26_RS02230 uvrA 468701..471523 (-) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -
  PWW26_RS02235 galU 471661..472533 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWW26_RS02240 qstR 472695..473339 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWW26_RS02245 ssb 473634..474173 (+) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWW26_RS02250 csrD 474425..476434 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PWW26_RS02255 - 476446..477894 (+) 1449 WP_005444325.1 MSHA biogenesis protein MshI -
  PWW26_RS02260 gspM 477891..478541 (+) 651 WP_005444327.1 type II secretion system protein GspM -
  PWW26_RS02265 - 478534..478863 (+) 330 WP_274878495.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=793788 PWW26_RS02245 WP_005444320.1 473634..474173(+) (ssb) [Vibrio harveyi strain fish10]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=793788 PWW26_RS02245 WP_005444320.1 473634..474173(+) (ssb) [Vibrio harveyi strain fish10]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTAGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464