Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OO857_RS12175 Genome accession   NZ_AP026080
Coordinates   2436321..2437331 (-) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain F690     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2431321..2442331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO857_RS12155 (CL8F690_23410) mepM 2432189..2433511 (-) 1323 WP_001184045.1 murein DD-endopeptidase MepM -
  OO857_RS12160 (CL8F690_23420) znuA 2433527..2434459 (-) 933 WP_001303192.1 zinc ABC transporter substrate-binding protein ZnuA -
  OO857_RS12165 (CL8F690_23430) znuC 2434538..2435293 (+) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  OO857_RS12170 (CL8F690_23440) znuB 2435290..2436075 (+) 786 WP_000571476.1 zinc ABC transporter permease subunit ZnuB -
  OO857_RS12175 (CL8F690_23450) ruvB 2436321..2437331 (-) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OO857_RS12180 (CL8F690_23460) ruvA 2437340..2437951 (-) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  OO857_RS12185 yobI 2438090..2438155 (-) 66 WP_010723105.1 stress response small protein YobI -
  OO857_RS12190 (CL8F690_23470) yebB 2438226..2438828 (+) 603 WP_001024949.1 YebB family permuted papain-like enzyme -
  OO857_RS12195 (CL8F690_23480) ruvC 2438830..2439351 (-) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  OO857_RS12200 (CL8F690_23490) yebC 2439386..2440126 (-) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OO857_RS12205 (CL8F690_23500) nudB 2440155..2440607 (-) 453 WP_001300367.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=79378 OO857_RS12175 WP_000568519.1 2436321..2437331(-) (ruvB) [Escherichia coli strain F690]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=79378 OO857_RS12175 WP_000568519.1 2436321..2437331(-) (ruvB) [Escherichia coli strain F690]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATTTGGCTGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTTTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494