Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PWW25_RS12720 Genome accession   NZ_CP118584
Coordinates   2706855..2707370 (-) Length   171 a.a.
NCBI ID   WP_005451501.1    Uniprot ID   A0A9X3RXU4
Organism   Vibrio harveyi strain fish5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2701855..2712370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS12705 aroB 2703229..2704329 (-) 1101 WP_038898114.1 3-dehydroquinate synthase -
  PWW25_RS12710 aroK 2704361..2704879 (-) 519 WP_005451507.1 shikimate kinase AroK -
  PWW25_RS12715 pilQ 2705069..2706820 (-) 1752 WP_005451505.1 type IV pilus secretin PilQ family protein Machinery gene
  PWW25_RS12720 pilP 2706855..2707370 (-) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  PWW25_RS12725 pilO 2707360..2707953 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  PWW25_RS12730 pilN 2707946..2708521 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  PWW25_RS12735 pilM 2708505..2709521 (-) 1017 WP_029789968.1 type IV pilus assembly protein PilM Machinery gene
  PWW25_RS12740 - 2709700..2712270 (+) 2571 WP_017819671.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19142.27 Da        Isoelectric Point: 10.1513

>NTDB_id=793668 PWW25_RS12720 WP_005451501.1 2706855..2707370(-) (pilP) [Vibrio harveyi strain fish5]
MRSKSLLMVCIAGVLTACQANDESLTEFIRDVENQARRDVTKLQPVEEYVVVNYEPEILRAPFELPKEATIATQPVARKD
CWQPPSRKRTGKLERFPLAQLRLKGVMGIGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=793668 PWW25_RS12720 WP_005451501.1 2706855..2707370(-) (pilP) [Vibrio harveyi strain fish5]
ATGAGAAGTAAATCTTTGCTGATGGTGTGTATTGCTGGCGTTTTGACTGCCTGCCAAGCCAATGATGAATCACTGACGGA
ATTTATTCGTGACGTGGAGAACCAAGCTCGCCGTGATGTCACCAAACTGCAGCCTGTTGAAGAGTATGTTGTCGTTAATT
ACGAACCCGAAATATTGCGTGCACCTTTCGAATTACCAAAAGAGGCAACGATTGCGACTCAACCTGTTGCAAGAAAAGAC
TGCTGGCAACCTCCTTCAAGAAAGCGAACTGGCAAATTGGAAAGGTTTCCTCTTGCGCAACTGCGCTTGAAGGGTGTGAT
GGGTATCGGCAGCAGTGTTTCTGGGTTGGTTCAGGCTCCGAATGGCACTGTTTACAAAGTAAAACCAGGTCAATACCTCG
GACGCAACAATGGCAAGGTTACCCATGTATCCCACAACTATTTATTGATTAATGAAACCTTGCCAGACGGTTTGGGCTGT
TGGCAAAAACGCAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

90.058

100

0.901
  pilP Vibrio cholerae strain A1552

59.494

92.398

0.55