Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHSLTHF2_RS00680 Genome accession   NZ_AP022843
Coordinates   155844..156503 (+) Length   219 a.a.
NCBI ID   WP_125744875.1    Uniprot ID   A0AAP9ZDA7
Organism   Halomonas hydrothermalis strain Slthf2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 150844..161503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHSLTHF2_RS00670 (HHSLTHF2_01290) uvrA 151275..154124 (-) 2850 WP_172419568.1 excinuclease ABC subunit UvrA -
  HHSLTHF2_RS00675 (HHSLTHF2_01300) - 154296..155675 (+) 1380 WP_172422477.1 MFS transporter -
  HHSLTHF2_RS00680 (HHSLTHF2_01310) ssb 155844..156503 (+) 660 WP_125744875.1 single-stranded DNA-binding protein Machinery gene
  HHSLTHF2_RS00685 (HHSLTHF2_01320) - 156562..157452 (+) 891 WP_125744877.1 sugar nucleotide-binding protein -
  HHSLTHF2_RS00690 (HHSLTHF2_01330) - 157449..158183 (+) 735 WP_125744879.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  HHSLTHF2_RS00695 (HHSLTHF2_01340) fabB 158272..159489 (-) 1218 WP_172419569.1 beta-ketoacyl-ACP synthase I -
  HHSLTHF2_RS00700 (HHSLTHF2_01350) fabA 159502..160017 (-) 516 WP_038480285.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23640.71 Da        Isoelectric Point: 6.4917

>NTDB_id=79366 HHSLTHF2_RS00680 WP_125744875.1 155844..156503(+) (ssb) [Halomonas hydrothermalis strain Slthf2]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATSDTWMDRQSGQRQERTEWHRIVLFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGDFQGGGAPQGGYAQNNPAQGAPAQQQHAPQHPAPQHSASQGHQGGG
MPQQGGYPPQGGAPQGNYGGAPQPARGPQHSQPAPANQNSNYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 660 bp        

>NTDB_id=79366 HHSLTHF2_RS00680 WP_125744875.1 155844..156503(+) (ssb) [Halomonas hydrothermalis strain Slthf2]
ATGGCGCGCGGTATTAACAAAGTCATTTTGATTGGTAATCTGGGCCAAGACCCTGAAGTACGCTTTACGCCCTCCGGAAC
GGCGGTAGCAAACCTGAATTTGGCGACGTCTGATACCTGGATGGATCGCCAAAGTGGACAGCGCCAAGAGCGTACCGAGT
GGCACCGTATTGTATTGTTCAATAAGACCGCTGAGATTGCCCAGCAGTACCTGAAAAAGGGCTCTAAGGTCTACATTGAA
GGTCGCCTACAAACCCGTAAGTGGCAAGACCAAAACGGTCAAGACCGCTACAGCACGGAGATTGTGGCCAACGACATGCA
GATGCTAGATAGTCGCGGCGGTGATTTCCAGGGTGGCGGAGCACCTCAAGGTGGTTACGCACAGAATAACCCTGCACAAG
GCGCACCAGCCCAGCAGCAACACGCGCCGCAGCACCCAGCTCCTCAGCATTCGGCCTCTCAGGGGCATCAGGGTGGCGGT
ATGCCTCAGCAGGGTGGTTATCCTCCCCAGGGCGGTGCTCCTCAAGGTAACTATGGCGGCGCGCCCCAACCTGCTCGTGG
GCCACAACACAGCCAGCCAGCTCCCGCCAATCAAAACAGCAATTATGGGGCTCCGGATCCAGGCAACTTCGATGATTTTG
ACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.673

100

0.516
  ssb Glaesserella parasuis strain SC1401

46.396

100

0.47
  ssb Neisseria meningitidis MC58

44.907

98.63

0.443
  ssb Neisseria gonorrhoeae MS11

44.907

98.63

0.443

Multiple sequence alignment