Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KH172YL63_RS21455 Genome accession   NZ_AP022842
Coordinates   4235846..4236358 (-) Length   170 a.a.
NCBI ID   WP_173107982.1    Uniprot ID   -
Organism   Bacillus sp. KH172YL63     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4230846..4241358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS21440 (KH172YL63_42240) - 4231901..4232824 (-) 924 WP_173107980.1 YybS family protein -
  KH172YL63_RS21445 (KH172YL63_42250) - 4233345..4235408 (-) 2064 WP_173107981.1 methyl-accepting chemotaxis protein -
  KH172YL63_RS21450 (KH172YL63_42260) rpsR 4235567..4235803 (-) 237 WP_034764780.1 30S ribosomal protein S18 -
  KH172YL63_RS21455 (KH172YL63_42270) ssbA 4235846..4236358 (-) 513 WP_173107982.1 single-stranded DNA-binding protein Machinery gene
  KH172YL63_RS21460 (KH172YL63_42280) rpsF 4236438..4236725 (-) 288 WP_173107983.1 30S ribosomal protein S6 -
  KH172YL63_RS21465 (KH172YL63_42290) ychF 4236983..4238083 (-) 1101 WP_173107984.1 redox-regulated ATPase YchF -
  KH172YL63_RS21470 (KH172YL63_42300) - 4238345..4238545 (-) 201 WP_232066079.1 DUF951 domain-containing protein -
  KH172YL63_RS21475 (KH172YL63_42310) - 4238559..4239413 (-) 855 WP_232066220.1 mechanosensitive ion channel family protein -
  KH172YL63_RS21480 (KH172YL63_42320) yyaC 4239745..4240365 (+) 621 WP_173107987.1 spore protease YyaC -
  KH172YL63_RS21485 (KH172YL63_42330) - 4240410..4241123 (-) 714 WP_173107988.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18878.62 Da        Isoelectric Point: 4.8013

>NTDB_id=79365 KH172YL63_RS21455 WP_173107982.1 4235846..4236358(-) (ssbA) [Bacillus sp. KH172YL63]
MMNRVVLVGRLTKDPELKYTPSGVAVASFTLAVNRSFTNQSGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVFMTEVVAESVQFLEPRSANQGDRGGSPGYSGGGQRDQSNPYSQNQNQQRNNNNNNYTRVDEDPFANDGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=79365 KH172YL63_RS21455 WP_173107982.1 4235846..4236358(-) (ssbA) [Bacillus sp. KH172YL63]
ATGATGAACCGTGTTGTATTAGTAGGGCGTTTAACCAAAGACCCTGAATTAAAATATACTCCAAGCGGAGTGGCTGTTGC
TTCGTTTACACTGGCAGTGAATCGTAGTTTTACGAATCAGTCAGGCGAACGGGAAGCAGATTTTATCAATTGTGTTGTAT
GGCGTCGCCCTGCAGAGAATGTAGCAAACTTTCTTAAAAAAGGCAGCTTAGCTGGCGTTGACGGTCGCATTCAAACACGT
AATTTCGAAGGACAGGATGGACGTCGTGTGTTTATGACGGAAGTTGTAGCAGAAAGCGTTCAGTTCTTAGAACCGCGTAG
TGCGAATCAAGGCGATCGTGGAGGAAGTCCGGGCTATTCGGGCGGAGGTCAGCGTGACCAAAGCAATCCGTATAGTCAGA
ATCAGAATCAACAACGCAACAACAATAATAACAACTATACACGTGTAGATGAAGATCCATTTGCAAATGACGGTCAGCCG
ATCGACATTTCAGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.143

100

0.712
  ssb Latilactobacillus sakei subsp. sakei 23K

56.395

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376
  ssb Glaesserella parasuis strain SC1401

35.393

100

0.371

Multiple sequence alignment