Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   PWW29_RS09110 Genome accession   NZ_CP118582
Coordinates   1947592..1948179 (+) Length   195 a.a.
NCBI ID   WP_005444533.1    Uniprot ID   A0A9X3RTZ3
Organism   Vibrio harveyi strain fish4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942592..1953179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS09090 panP 1942797..1944443 (-) 1647 WP_029789430.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  PWW29_RS09095 - 1944565..1945077 (-) 513 WP_005444538.1 hypothetical protein -
  PWW29_RS09100 - 1945289..1946194 (-) 906 WP_005444536.1 lysine exporter LysO family protein -
  PWW29_RS09105 - 1946301..1947221 (-) 921 WP_274882684.1 HDOD domain-containing protein -
  PWW29_RS09110 tfoX 1947592..1948179 (+) 588 WP_005444533.1 TfoX/Sxy family DNA transformation protein Regulator
  PWW29_RS09115 - 1948390..1948938 (-) 549 WP_005442235.1 hypothetical protein -
  PWW29_RS09120 - 1949146..1949643 (-) 498 WP_009698122.1 response regulator -
  PWW29_RS09125 - 1949640..1951580 (-) 1941 WP_053052735.1 ATP-binding protein -
  PWW29_RS09130 - 1951766..1953028 (+) 1263 WP_017188166.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22312.52 Da        Isoelectric Point: 6.4656

>NTDB_id=793616 PWW29_RS09110 WP_005444533.1 1947592..1948179(+) (tfoX) [Vibrio harveyi strain fish4]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TDLFDSGFAGLDALLQKSIECSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVTYGS
DVDVKLLWKFAGATDGIHWKLLQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=793616 PWW29_RS09110 WP_005444533.1 1947592..1948179(+) (tfoX) [Vibrio harveyi strain fish4]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGCGGGAT
TGGTTTATTCAGCAACGACGCAATGTTCGCACTAGTAAGTAACGACTGTTGTTATTTACGTGGTGGTAACGGGTTAGATG
AAGAATTTACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACCGTTAACTACTATGATGTA
ACCGATCTATTTGACTCAGGTTTTGCGGGTCTAGACGCGTTGTTACAAAAATCGATTGAATGTTCTATTAAGGAACGTAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGACCTACCAAATATGCAGTTGACGCTAGAGCGTATGGTCAAAAAAG
CAGGTATTGATGACGTAGAAACGTTTTTGGAACTAGGACCAGTAGAAGTATTTAATAAAGTAAGAGTGACATACGGTAGT
GATGTTGATGTGAAGCTTCTATGGAAGTTTGCTGGCGCCACTGATGGTATTCACTGGAAGCTGCTCCAAGAACCACGCAA
GAAACAACTGCTGGCAATGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

96.41

100

0.964
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.912

98.974

0.682
  tfoX Vibrio cholerae strain A1552

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

59.686

97.949

0.585