Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWW22_RS13145 Genome accession   NZ_CP118578
Coordinates   2888837..2889376 (-) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2883837..2894376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW22_RS13125 - 2884147..2884476 (-) 330 WP_009698822.1 hypothetical protein -
  PWW22_RS13130 gspM 2884469..2885119 (-) 651 WP_005444327.1 type II secretion system protein GspM -
  PWW22_RS13135 - 2885116..2886564 (-) 1449 WP_274880424.1 MSHA biogenesis protein MshI -
  PWW22_RS13140 csrD 2886576..2888585 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PWW22_RS13145 ssb 2888837..2889376 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWW22_RS13150 qstR 2889671..2890315 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWW22_RS13155 galU 2890477..2891349 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWW22_RS13160 uvrA 2891487..2894309 (+) 2823 WP_274880425.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=793528 PWW22_RS13145 WP_005444320.1 2888837..2889376(-) (ssb) [Vibrio harveyi strain fish2]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=793528 PWW22_RS13145 WP_005444320.1 2888837..2889376(-) (ssb) [Vibrio harveyi strain fish2]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAACAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464