Detailed information NTG0793520

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PWW22_RS12105
• Genome accession: NZ_CP118578
• Coordinates: 2690280..2691149 (+)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain fish2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2685280..2696149

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW22_RS12085	nadC	2685685..2686572 (+)	888	WP_045393857.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PWW22_RS12090	pilA	2686837..2687265 (+)	429	WP_009698754.1	pilin	Machinery gene
PWW22_RS12095	pilB	2687265..2688950 (+)	1686	WP_017189132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWW22_RS12100	pilC	2688984..2690207 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PWW22_RS12105	pilD	2690280..2691149 (+)	870	WP_045488712.1	A24 family peptidase	Machinery gene
PWW22_RS12110	coaE	2691150..2691764 (+)	615	WP_017817675.1	dephospho-CoA kinase	-
PWW22_RS12115	zapD	2691792..2692532 (+)	741	WP_274880413.1	cell division protein ZapD	-
PWW22_RS12120	yacG	2692589..2692789 (+)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PWW22_RS12125	rplS	2693156..2693509 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
PWW22_RS12130	trmD	2693551..2694294 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PWW22_RS12135	rimM	2694322..2694870 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
PWW22_RS12140	rpsP	2694899..2695147 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=793520 PWW22_RS12105 WP_045488712.1 2690280..2691149(+) (pilD) [Vibrio harveyi strain fish2]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=793520 PWW22_RS12105 WP_045488712.1 2690280..2691149(+) (pilD) [Vibrio harveyi strain fish2]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGTGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGCTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGCCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436