Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PWW22_RS12160 Genome accession   NZ_CP118578
Coordinates   2699270..2699788 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain fish2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2694270..2704788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW22_RS12135 rimM 2694322..2694870 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  PWW22_RS12140 rpsP 2694899..2695147 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  PWW22_RS12145 ffh 2695358..2696740 (-) 1383 WP_005446242.1 signal recognition particle protein -
  PWW22_RS12150 - 2696954..2697748 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  PWW22_RS12155 - 2697903..2699177 (+) 1275 WP_005446238.1 CNNM domain-containing protein -
  PWW22_RS12160 luxS 2699270..2699788 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  PWW22_RS12165 - 2699875..2700480 (-) 606 WP_029790340.1 hypothetical protein -
  PWW22_RS12170 gshA 2700500..2702068 (-) 1569 WP_029790338.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=793521 PWW22_RS12160 WP_005448429.1 2699270..2699788(-) (luxS) [Vibrio harveyi strain fish2]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=793521 PWW22_RS12160 WP_005448429.1 2699270..2699788(-) (luxS) [Vibrio harveyi strain fish2]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855