Detailed information NTG0793473

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PWW27_RS10715
• Genome accession: NZ_CP118576
• Coordinates: 2324129..2324998 (+)
• Length: 289 a.a.
• NCBI ID: WP_110415384.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain fish1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2319129..2329998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW27_RS10695	nadC	2319494..2320381 (+)	888	WP_274885710.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PWW27_RS10700	pilA	2320646..2321110 (+)	465	WP_005446258.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
PWW27_RS10705	pilB	2321114..2322799 (+)	1686	WP_017189132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWW27_RS10710	pilC	2322833..2324056 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PWW27_RS10715	pilD	2324129..2324998 (+)	870	WP_110415384.1	A24 family peptidase	Machinery gene
PWW27_RS10720	coaE	2324999..2325613 (+)	615	WP_110415385.1	dephospho-CoA kinase	-
PWW27_RS10725	zapD	2325641..2326381 (+)	741	WP_005446251.1	cell division protein ZapD	-
PWW27_RS10730	yacG	2326438..2326638 (+)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PWW27_RS10735	rplS	2327005..2327358 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
PWW27_RS10740	trmD	2327400..2328143 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PWW27_RS10745	rimM	2328171..2328719 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
PWW27_RS10750	rpsP	2328748..2328996 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32548.79 Da
• Isoelectric Point: 7.5422

>NTDB_id=793473 PWW27_RS10715 WP_110415384.1 2324129..2324998(+) (pilD) [Vibrio harveyi strain fish1]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEILTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=793473 PWW27_RS10715 WP_110415384.1 2324129..2324998(+) (pilD) [Vibrio harveyi strain fish1]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGTGCAGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGATATTAACCTTAAGCGTACCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGTTATTGCTAAAAGGTAAATGCCACAACTGCCAATCGCCTATCAGTGCTCGCTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTACCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCCTGTGAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGTGTC
ATTTTTGGTCTTATCCAACTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.29	95.502	0.433