Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PXH81_RS08760 | Genome accession | NZ_CP118539 |
| Coordinates | 1887697..1888143 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa strain ICMP 15197 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1880344..1901494 | 1887697..1888143 | within | 0 |
Gene organization within MGE regions
Location: 1880344..1901494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PXH81_RS08715 (PXH81_08715) | - | 1880344..1880859 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| PXH81_RS08720 (PXH81_08720) | - | 1880856..1881092 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| PXH81_RS08725 (PXH81_08725) | - | 1881169..1883268 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| PXH81_RS08730 (PXH81_08730) | - | 1883265..1883873 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| PXH81_RS08735 (PXH81_08735) | - | 1884270..1885739 (-) | 1470 | WP_038233147.1 | VapE domain-containing protein | - |
| PXH81_RS08740 (PXH81_08740) | - | 1885736..1886791 (-) | 1056 | WP_038233149.1 | DNA primase | - |
| PXH81_RS08745 (PXH81_08745) | - | 1886790..1887191 (+) | 402 | WP_038233152.1 | hypothetical protein | - |
| PXH81_RS08750 (PXH81_08750) | - | 1887293..1887466 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| PXH81_RS08755 (PXH81_08755) | - | 1887441..1887713 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| PXH81_RS08760 (PXH81_08760) | ssb | 1887697..1888143 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| PXH81_RS08765 (PXH81_08765) | - | 1888162..1888437 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| PXH81_RS08770 (PXH81_08770) | - | 1888437..1889610 (+) | 1174 | Protein_1714 | integrase | - |
| PXH81_RS08775 (PXH81_08775) | - | 1889920..1890123 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| PXH81_RS08780 (PXH81_08780) | - | 1890190..1890597 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| PXH81_RS08785 (PXH81_08785) | - | 1890798..1890923 (-) | 126 | WP_256626233.1 | hypothetical protein | - |
| PXH81_RS08790 (PXH81_08790) | - | 1891077..1892531 (-) | 1455 | WP_004089759.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| PXH81_RS08795 (PXH81_08795) | - | 1892528..1893259 (-) | 732 | WP_004089760.1 | hypothetical protein | - |
| PXH81_RS08800 (PXH81_08800) | - | 1893292..1893501 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| PXH81_RS08810 (PXH81_08810) | - | 1893735..1894190 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| PXH81_RS08815 (PXH81_08815) | - | 1894187..1898752 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| PXH81_RS08820 (PXH81_08820) | - | 1898756..1899250 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| PXH81_RS08825 (PXH81_08825) | - | 1899250..1900506 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| PXH81_RS08830 (PXH81_08830) | pilV | 1900503..1900985 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| PXH81_RS08835 (PXH81_08835) | - | 1900982..1901494 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=793062 PXH81_RS08760 WP_004088866.1 1887697..1888143(+) (ssb) [Xylella fastidiosa strain ICMP 15197]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=793062 PXH81_RS08760 WP_004088866.1 1887697..1888143(+) (ssb) [Xylella fastidiosa strain ICMP 15197]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |