Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUT85_RS01500 Genome accession   NZ_CP118530
Coordinates   321359..321898 (+) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 316359..326898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT85_RS01485 uvrA 316426..319248 (-) 2823 WP_274790514.1 excinuclease ABC subunit UvrA -
  PUT85_RS01490 galU 319386..320258 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PUT85_RS01495 qstR 320420..321064 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  PUT85_RS01500 ssb 321359..321898 (+) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PUT85_RS01505 csrD 322150..324159 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PUT85_RS01510 - 324171..325619 (+) 1449 WP_005444325.1 MSHA biogenesis protein MshI -
  PUT85_RS01515 gspM 325616..326266 (+) 651 WP_005444327.1 type II secretion system protein GspM -
  PUT85_RS01520 - 326259..326588 (+) 330 WP_009698822.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=792917 PUT85_RS01500 WP_005444320.1 321359..321898(+) (ssb) [Vibrio harveyi strain A2]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=792917 PUT85_RS01500 WP_005444320.1 321359..321898(+) (ssb) [Vibrio harveyi strain A2]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTAGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464