Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWS04_RS08150 Genome accession   NZ_CP118528
Coordinates   1694664..1695203 (+) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain 94/17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1689664..1700203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS04_RS08135 uvrA 1689731..1692553 (-) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -
  PWS04_RS08140 galU 1692691..1693563 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWS04_RS08145 qstR 1693725..1694369 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWS04_RS08150 ssb 1694664..1695203 (+) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWS04_RS08155 csrD 1695455..1697464 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PWS04_RS08160 - 1697476..1698924 (+) 1449 WP_110416082.1 MSHA biogenesis protein MshI -
  PWS04_RS08165 gspM 1698921..1699571 (+) 651 WP_005444327.1 type II secretion system protein GspM -
  PWS04_RS08170 - 1699564..1699893 (+) 330 WP_009698822.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=792887 PWS04_RS08150 WP_005444320.1 1694664..1695203(+) (ssb) [Vibrio harveyi strain 94/17]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=792887 PWS04_RS08150 WP_005444320.1 1694664..1695203(+) (ssb) [Vibrio harveyi strain 94/17]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTAGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAACAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464