Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7613_RS04090 Genome accession   NZ_CP131720
Coordinates   799037..799543 (-) Length   168 a.a.
NCBI ID   WP_012054898.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N07-308     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 794037..804543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7613_RS04055 (Q7613_04055) raiA 794270..794593 (-) 324 WP_005653397.1 ribosome-associated translation inhibitor RaiA -
  Q7613_RS04060 (Q7613_04060) bamC 794783..795412 (-) 630 WP_070828364.1 outer membrane protein assembly factor BamC -
  Q7613_RS04065 (Q7613_04065) dapA 795523..796419 (-) 897 WP_050846026.1 4-hydroxy-tetrahydrodipicolinate synthase -
  Q7613_RS04070 (Q7613_04070) bcp 796520..796987 (+) 468 WP_005668209.1 thioredoxin-dependent thiol peroxidase -
  Q7613_RS04075 (Q7613_04075) exbB 797156..797608 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  Q7613_RS04080 (Q7613_04080) exbD 797612..798055 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  Q7613_RS04085 (Q7613_04085) - 798065..798859 (+) 795 WP_005692201.1 energy transducer TonB -
  Q7613_RS04090 (Q7613_04090) ssb 799037..799543 (-) 507 WP_012054898.1 single-stranded DNA-binding protein Machinery gene
  Q7613_RS04095 (Q7613_04095) uvrA 799697..802528 (+) 2832 WP_070828363.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18837.66 Da        Isoelectric Point: 5.2733

>NTDB_id=792378 Q7613_RS04090 WP_012054898.1 799037..799543(-) (ssb) [Haemophilus influenzae strain 2016N07-308]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGFSNEMGSSPQPSYQARQTNNGNSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=792378 Q7613_RS04090 WP_012054898.1 799037..799543(-) (ssb) [Haemophilus influenzae strain 2016N07-308]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGAAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTGGAGGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGGCGTAATCAAAACGCAGGTGGTTTCTCTAATGAGATGGGATCTTCACCACAACCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAAGCTGCACCACAGGCTGAGCCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.956

100

0.732
  ssb Vibrio cholerae strain A1552

56.425

100

0.601
  ssb Neisseria meningitidis MC58

51.445

100

0.53
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518