Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q7613_RS03745 Genome accession   NZ_CP131720
Coordinates   735013..736020 (+) Length   335 a.a.
NCBI ID   WP_038440776.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N07-308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 730013..741020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7613_RS03720 (Q7613_03720) aspS 730696..732462 (+) 1767 WP_011271986.1 aspartate--tRNA ligase -
  Q7613_RS03725 (Q7613_03725) nudB 732484..732957 (+) 474 WP_011271985.1 dihydroneopterin triphosphate diphosphatase -
  Q7613_RS03730 (Q7613_03730) - 732969..733709 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q7613_RS03735 (Q7613_03735) ruvC 733756..734328 (+) 573 WP_005666663.1 crossover junction endodeoxyribonuclease RuvC -
  Q7613_RS03740 (Q7613_03740) ruvA 734391..735005 (+) 615 WP_038440774.1 Holliday junction branch migration protein RuvA -
  Q7613_RS03745 (Q7613_03745) ruvB 735013..736020 (+) 1008 WP_038440776.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q7613_RS03750 (Q7613_03750) - 736072..736359 (-) 288 WP_011271982.1 DUF5339 domain-containing protein -
  Q7613_RS03755 (Q7613_03755) xerD 736532..737425 (-) 894 WP_011271981.1 site-specific tyrosine recombinase XerD -
  Q7613_RS03760 (Q7613_03760) - 737456..738622 (-) 1167 WP_070828278.1 3-phenylpropionate MFS transporter -
  Q7613_RS03765 (Q7613_03765) proC 738622..739437 (-) 816 WP_070828279.1 pyrroline-5-carboxylate reductase -
  Q7613_RS03770 (Q7613_03770) - 740102..740992 (+) 891 WP_044364843.1 replication initiation protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37090.44 Da        Isoelectric Point: 4.7793

>NTDB_id=792372 Q7613_RS03745 WP_038440776.1 735013..736020(+) (ruvB) [Haemophilus influenzae strain 2016N07-308]
MIEADRIISGQAKLDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=792372 Q7613_RS03745 WP_038440776.1 735013..736020(+) (ruvB) [Haemophilus influenzae strain 2016N07-308]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGCTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGCTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTTACTAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCGCTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGGCTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGCCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae R6

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae D39

57.975

97.313

0.564
  ruvB Helicobacter pylori 26695

54.633

93.433

0.51
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507