Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EsVE80_RS00050 | Genome accession | NZ_AP022822 |
| Coordinates | 13171..13701 (+) | Length | 176 a.a. |
| NCBI ID | WP_173101905.1 | Uniprot ID | A0A679IH87 |
| Organism | Enterococcus saigonensis strain VE80 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 8171..18701
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EsVE80_RS00040 (EsVE80_00070) | gyrA | 9772..12255 (+) | 2484 | WP_232061344.1 | DNA gyrase subunit A | - |
| EsVE80_RS00045 (EsVE80_00080) | rpsF | 12826..13125 (+) | 300 | WP_173101904.1 | 30S ribosomal protein S6 | - |
| EsVE80_RS00050 (EsVE80_00090) | ssb | 13171..13701 (+) | 531 | WP_173101905.1 | single-stranded DNA-binding protein | Machinery gene |
| EsVE80_RS00055 (EsVE80_00100) | rpsR | 13725..13961 (+) | 237 | WP_173101906.1 | 30S ribosomal protein S18 | - |
| EsVE80_RS00060 (EsVE80_00110) | - | 14919..16868 (+) | 1950 | WP_173101907.1 | DHH family phosphoesterase | - |
| EsVE80_RS00065 (EsVE80_00120) | rplI | 17041..17493 (+) | 453 | WP_173101908.1 | 50S ribosomal protein L9 | - |
| EsVE80_RS00070 (EsVE80_00130) | - | 17710..18324 (-) | 615 | WP_173101909.1 | DUF6273 domain-containing protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19380.01 Da Isoelectric Point: 4.5673
>NTDB_id=79227 EsVE80_RS00050 WP_173101905.1 13171..13701(+) (ssb) [Enterococcus saigonensis strain VE80]
MINNVVLVGRLTKDPDLRYTANGAAVATFTLAVNRNFTNQSGDREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRSANEQRQQGSTNTNGGGGFNNNYGGANQQNNFNQNQPSQTNGMPSFDRDTSDPF
GSDASTIDISDDDLPF
MINNVVLVGRLTKDPDLRYTANGAAVATFTLAVNRNFTNQSGDREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRSANEQRQQGSTNTNGGGGFNNNYGGANQQNNFNQNQPSQTNGMPSFDRDTSDPF
GSDASTIDISDDDLPF
Nucleotide
Download Length: 531 bp
>NTDB_id=79227 EsVE80_RS00050 WP_173101905.1 13171..13701(+) (ssb) [Enterococcus saigonensis strain VE80]
TTGATTAATAATGTAGTTTTAGTCGGTAGATTAACCAAAGATCCTGATTTACGTTACACAGCCAATGGTGCGGCAGTTGC
GACCTTTACCCTAGCAGTAAATCGCAATTTCACAAACCAAAGTGGTGATCGTGAAGCAGATTTTATCAATTGTGTAATCT
GGCGTAAACCAGCCGAAACTTTAGCTAATTATGCCCGCAAAGGAACGTTGCTAGGAGTTACTGGCCGTATCCAAACTCGG
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTGACTGAAGTGGTTGCTGAAAACTTCCAATTATTAGAATCACGTTC
TGCAAACGAACAACGCCAACAAGGTAGTACCAATACGAACGGTGGCGGTGGTTTCAACAATAATTATGGTGGTGCCAACC
AACAAAACAATTTTAATCAAAACCAACCTTCTCAAACCAACGGAATGCCGAGTTTTGATCGCGATACTTCTGATCCATTC
GGGTCTGATGCATCAACCATCGACATTTCAGACGATGATTTACCATTCTAA
TTGATTAATAATGTAGTTTTAGTCGGTAGATTAACCAAAGATCCTGATTTACGTTACACAGCCAATGGTGCGGCAGTTGC
GACCTTTACCCTAGCAGTAAATCGCAATTTCACAAACCAAAGTGGTGATCGTGAAGCAGATTTTATCAATTGTGTAATCT
GGCGTAAACCAGCCGAAACTTTAGCTAATTATGCCCGCAAAGGAACGTTGCTAGGAGTTACTGGCCGTATCCAAACTCGG
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTGACTGAAGTGGTTGCTGAAAACTTCCAATTATTAGAATCACGTTC
TGCAAACGAACAACGCCAACAAGGTAGTACCAATACGAACGGTGGCGGTGGTTTCAACAATAATTATGGTGGTGCCAACC
AACAAAACAATTTTAATCAAAACCAACCTTCTCAAACCAACGGAATGCCGAGTTTTGATCGCGATACTTCTGATCCATTC
GGGTCTGATGCATCAACCATCGACATTTCAGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.5 |
100 |
0.625 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.563 |
100 |
0.619 |
| ssb | Glaesserella parasuis strain SC1401 |
34.197 |
100 |
0.375 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
60.227 |
0.375 |