Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q7617_RS03890 Genome accession   NZ_CP131716
Coordinates   766006..767013 (+) Length   335 a.a.
NCBI ID   WP_005649027.1    Uniprot ID   Q4QNM6
Organism   Haemophilus influenzae strain 2016C10-304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 761006..772013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS03865 (Q7617_03865) aspS 761688..763454 (+) 1767 WP_342122299.1 aspartate--tRNA ligase -
  Q7617_RS03870 (Q7617_03870) nudB 763476..763949 (+) 474 WP_342120459.1 dihydroneopterin triphosphate diphosphatase -
  Q7617_RS03875 (Q7617_03875) - 763962..764702 (+) 741 WP_005662961.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q7617_RS03880 (Q7617_03880) ruvC 764749..765321 (+) 573 WP_005654081.1 crossover junction endodeoxyribonuclease RuvC -
  Q7617_RS03885 (Q7617_03885) ruvA 765384..765998 (+) 615 WP_050948991.1 Holliday junction branch migration protein RuvA -
  Q7617_RS03890 (Q7617_03890) ruvB 766006..767013 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q7617_RS03895 (Q7617_03895) - 767065..767352 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  Q7617_RS03900 (Q7617_03900) xerD 767525..768418 (-) 894 WP_005649023.1 site-specific tyrosine recombinase XerD -
  Q7617_RS03905 (Q7617_03905) - 768449..769615 (-) 1167 WP_075985528.1 3-phenylpropionate MFS transporter -
  Q7617_RS03910 (Q7617_03910) proC 769615..770430 (-) 816 WP_005649013.1 pyrroline-5-carboxylate reductase -
  Q7617_RS03915 (Q7617_03915) - 771096..771986 (+) 891 WP_075985527.1 replication initiation protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37076.41 Da        Isoelectric Point: 4.7793

>NTDB_id=792113 Q7617_RS03890 WP_005649027.1 766006..767013(+) (ruvB) [Haemophilus influenzae strain 2016C10-304]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=792113 Q7617_RS03890 WP_005649027.1 766006..767013(+) (ruvB) [Haemophilus influenzae strain 2016C10-304]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATTGACCGCGCTATTCGCCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAAATGGATATTTTCATCAAGGCTGCCAAACTCCGTCAAGATG
CCTTAGATCATTTGTTGATTTTTGGCCCCCCTGGTTTGGGAAAAACAACCCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCAGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTAACTAATCTTGAACCGCA
CGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AATTAGATATTATGATTGGCGAAGGGCCAGCTGCTCGTTCTATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCGCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGACGGTGGGCCTGTGGGGCTAGATAATCTTGCCGCTGCGATCGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGTCGTATTGCA
ACATCACAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QNM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae R6

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae D39

57.975

97.313

0.564
  ruvB Helicobacter pylori 26695

54.633

93.433

0.51
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507