Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PU133_RS12070 Genome accession   NZ_CP118314
Coordinates   2547488..2547997 (-) Length   169 a.a.
NCBI ID   WP_404861905.1    Uniprot ID   -
Organism   Georhizobium sp. MAB10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2542488..2552997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PU133_RS12050 trkA 2543951..2545327 (-) 1377 WP_404861902.1 Trk system potassium transporter TrkA -
  PU133_RS12055 - 2545453..2546220 (-) 768 WP_404861903.1 outer membrane protein -
  PU133_RS12065 - 2546657..2547430 (+) 774 WP_404861904.1 NAD kinase -
  PU133_RS12070 ssb 2547488..2547997 (-) 510 WP_404861905.1 single-stranded DNA-binding protein Machinery gene
  PU133_RS12075 uvrA 2548355..2551276 (+) 2922 WP_404861906.1 excinuclease ABC subunit UvrA -
  PU133_RS12080 - 2551319..2551945 (+) 627 WP_404861907.1 glutathione S-transferase family protein -
  PU133_RS12085 - 2551955..2552767 (+) 813 WP_404861908.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18310.09 Da        Isoelectric Point: 5.3397

>NTDB_id=791835 PU133_RS12070 WP_404861905.1 2547488..2547997(-) (ssb) [Georhizobium sp. MAB10]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLSVATSETWRDRNSGERKEKTEWHRVVIFNEGLCKVAESYLKKGAKVYI
EGQLQTRKWQDQSGQDKYSTEIVLQGFNSTLTMLDGRGEGGGMGQGGGGGGRGGSDYSGGGVGGNDYNRQSPASRNDDFS
RDMDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=791835 PU133_RS12070 WP_404861905.1 2547488..2547997(-) (ssb) [Georhizobium sp. MAB10]
ATGGCAGGAAGCGTCAACAAGGTCATTCTCGTCGGAAATCTGGGTGCCGACCCGGAAATCCGTCGCACACAGGACGGCCG
CCCGATTGCCAATCTGTCCGTCGCGACTTCGGAAACCTGGCGCGATCGTAACTCCGGCGAACGCAAGGAGAAGACCGAGT
GGCACCGCGTCGTCATTTTCAATGAGGGCCTGTGCAAGGTTGCGGAAAGCTACCTGAAGAAGGGCGCCAAGGTGTATATC
GAGGGCCAGCTCCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGACAAATACTCCACCGAGATCGTTCTGCAGGGGTT
CAACTCGACACTGACCATGCTCGATGGACGCGGCGAGGGCGGTGGCATGGGGCAGGGTGGCGGCGGCGGTGGTCGCGGCG
GCTCGGATTATTCGGGCGGGGGCGTTGGCGGCAACGACTACAACCGACAGTCGCCGGCATCGCGCAACGACGATTTCTCC
CGCGACATGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.445

100

0.527
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.527
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.408
  ssb Neisseria meningitidis MC58

38.547

100

0.408