Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PVK54_RS08545 Genome accession   NZ_CP118312
Coordinates   1633493..1633984 (-) Length   163 a.a.
NCBI ID   WP_002983122.1    Uniprot ID   A0A9X8XIP7
Organism   Streptococcus pyogenes strain 20181688     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1628493..1638984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK54_RS08520 (PVK54_08475) - 1629289..1629711 (+) 423 WP_021340646.1 Ltp family lipoprotein -
  PVK54_RS08525 (PVK54_08480) - 1629826..1630980 (+) 1155 WP_023078039.1 site-specific integrase -
  PVK54_RS08530 (PVK54_08485) - 1631224..1632168 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  PVK54_RS08535 (PVK54_08490) - 1632300..1632956 (+) 657 WP_002983144.1 DUF1129 domain-containing protein -
  PVK54_RS08540 (PVK54_08495) rpsR 1633089..1633328 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  PVK54_RS08545 (PVK54_08500) ssb 1633493..1633984 (-) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  PVK54_RS08550 (PVK54_08505) rpsF 1634006..1634296 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  PVK54_RS08555 (PVK54_08510) - 1634469..1634762 (-) 294 WP_002983113.1 hypothetical protein -
  PVK54_RS08560 (PVK54_08515) mutY 1634930..1636084 (+) 1155 WP_002988276.1 A/G-specific adenine glycosylase -
  PVK54_RS08565 (PVK54_08520) - 1636160..1636747 (+) 588 WP_002988273.1 helix-turn-helix domain-containing protein -
  PVK54_RS08570 (PVK54_08525) trxA 1636799..1637131 (-) 333 WP_001932060.1 thioredoxin -
  PVK54_RS08575 (PVK54_08530) - 1637194..1637694 (-) 501 WP_002988255.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=791821 PVK54_RS08545 WP_002983122.1 1633493..1633984(-) (ssb) [Streptococcus pyogenes strain 20181688]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=791821 PVK54_RS08545 WP_002983122.1 1633493..1633984(-) (ssb) [Streptococcus pyogenes strain 20181688]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362