Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G6L01_RS07070 Genome accession   NZ_CP118259
Coordinates   1503016..1503546 (-) Length   176 a.a.
NCBI ID   WP_070164760.1    Uniprot ID   -
Organism   Agrobacterium vitis strain T60/94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1498016..1508546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L01_RS07055 (G6L01_007055) gyrA 1498943..1501735 (-) 2793 WP_070164757.1 DNA gyrase subunit A -
  G6L01_RS07060 (G6L01_007060) - 1502014..1502643 (+) 630 WP_071206385.1 MarC family protein -
  G6L01_RS07065 (G6L01_007065) - 1502719..1502973 (-) 255 WP_070164759.1 hypothetical protein -
  G6L01_RS07070 (G6L01_007070) ssb 1503016..1503546 (-) 531 WP_070164760.1 single-stranded DNA-binding protein Machinery gene
  G6L01_RS07075 (G6L01_007075) uvrA 1503825..1506746 (+) 2922 WP_070164761.1 excinuclease ABC subunit UvrA -
  G6L01_RS07080 (G6L01_007080) - 1506768..1507571 (+) 804 WP_070164762.1 DUF72 domain-containing protein -
  G6L01_RS07085 (G6L01_007085) - 1507579..1508118 (+) 540 WP_070164763.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18525.28 Da        Isoelectric Point: 5.9492

>NTDB_id=791159 G6L01_RS07070 WP_070164760.1 1503016..1503546(-) (ssb) [Agrobacterium vitis strain T60/94]
MAGSVNKVILIGNLGADPEIRRTQDGKPIANLRIATSESWRDRNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGATVYI
EGQLQTRKWQDQNGNDRYSTEIVLQGFNSTLTMLGGRGEGGGAARGGSDFGGGGGGYDDYGSAPARSGGASSSGGGRGAS
APSGGFSRDMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=791159 G6L01_RS07070 WP_070164760.1 1503016..1503546(-) (ssb) [Agrobacterium vitis strain T60/94]
ATGGCTGGAAGCGTCAACAAGGTTATTTTGATCGGCAATCTGGGCGCCGACCCGGAAATCCGCCGTACCCAGGACGGTAA
GCCGATTGCCAACCTGCGCATCGCCACGTCCGAATCCTGGCGCGACCGTAACTCCGGCGAGCGCAAGGAAAAGACCGAAT
GGCACAGCGTGGTGATCTTCAATGAAGGTCTCTGCAAGGTGGCCGAACAATATCTGAAGAAGGGTGCGACCGTTTATATC
GAGGGCCAGCTTCAGACCCGCAAATGGCAGGACCAGAACGGCAATGACCGTTACTCGACGGAAATCGTCCTCCAGGGCTT
CAATTCGACACTGACCATGCTCGGTGGCCGTGGCGAAGGTGGCGGTGCTGCCCGTGGTGGCAGCGATTTCGGCGGCGGCG
GTGGTGGTTACGACGATTACGGCTCGGCCCCGGCCCGCAGCGGCGGCGCATCCTCCTCGGGCGGTGGTCGCGGTGCCAGC
GCGCCATCGGGCGGCTTCTCCCGCGATATGGACGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.299

98.864

0.517
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.477
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.42
  ssb Neisseria meningitidis MC58

40.223

100

0.409