Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PU634_RS13910 Genome accession   NZ_CP118224
Coordinates   2898972..2899553 (-) Length   193 a.a.
NCBI ID   WP_306761376.1    Uniprot ID   -
Organism   Oceanimonas pelagia strain NTOU-MSR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2893972..2904553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PU634_RS13895 (PU634_13905) - 2894764..2895807 (-) 1044 WP_306761374.1 rod shape-determining protein -
  PU634_RS13900 (PU634_13910) - 2895982..2896887 (+) 906 WP_371319607.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -
  PU634_RS13905 (PU634_13915) - 2896884..2898797 (-) 1914 WP_306761375.1 EAL domain-containing protein -
  PU634_RS13910 (PU634_13920) ssb 2898972..2899553 (-) 582 WP_306761376.1 single-stranded DNA-binding protein Machinery gene
  PU634_RS13915 (PU634_13925) - 2899568..2900941 (-) 1374 WP_306761377.1 MFS transporter -
  PU634_RS13920 (PU634_13930) uvrA 2901090..2903918 (+) 2829 WP_306763700.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21161.19 Da        Isoelectric Point: 6.4801

>NTDB_id=791117 PU634_RS13910 WP_306761376.1 2898972..2899553(-) (ssb) [Oceanimonas pelagia strain NTOU-MSR1]
MANRGINKVILIGHLGQDPEVRYMPNGNAVANITLATSETWRDKQSGEQRERTEWHRVVFFGKLAEIAGEYLRKGSQVYV
EGRLQTRKWQDQGGQDRYTTEVVVDQGGTMQMLGGRPQGAGGGQGGWNQGQQGGGQQQGNWGQQQGGGQYVQQGGQSQYG
GNKPQGQPQPAAKPQSQPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=791117 PU634_RS13910 WP_306761376.1 2898972..2899553(-) (ssb) [Oceanimonas pelagia strain NTOU-MSR1]
ATGGCCAATAGAGGCATCAACAAAGTCATCCTGATCGGGCACCTGGGTCAGGATCCCGAAGTGCGCTATATGCCTAACGG
CAACGCCGTCGCCAACATTACCCTGGCCACCAGTGAAACCTGGCGCGACAAGCAGAGCGGAGAGCAGCGCGAGCGCACCG
AATGGCACCGGGTGGTGTTCTTCGGCAAGCTGGCCGAAATTGCCGGAGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTG
GAAGGCCGGCTGCAGACCCGCAAGTGGCAGGATCAGGGCGGTCAGGACCGCTACACCACCGAGGTGGTGGTGGATCAGGG
CGGCACCATGCAGATGCTGGGCGGTCGCCCGCAGGGCGCCGGTGGTGGCCAGGGCGGCTGGAACCAGGGCCAGCAGGGTG
GCGGTCAGCAACAGGGCAACTGGGGCCAGCAGCAGGGCGGCGGCCAGTATGTCCAGCAGGGGGGCCAGTCCCAGTACGGC
GGCAACAAGCCTCAGGGGCAGCCGCAACCGGCAGCCAAGCCCCAGAGCCAGCCGGTATACAACGAGCCGCCGATGGACTT
CGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65.482

100

0.668
  ssb Glaesserella parasuis strain SC1401

56.995

100

0.57
  ssb Neisseria gonorrhoeae MS11

47.12

98.964

0.466
  ssb Neisseria meningitidis MC58

46.114

100

0.461