Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PUW21_RS19285 Genome accession   NZ_CP118167
Coordinates   3677279..3677968 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain 21855     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3672279..3682968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW21_RS19250 (PUW21_19250) flgN 3672459..3672941 (-) 483 WP_003227999.1 flagellar protein FlgN -
  PUW21_RS19255 (PUW21_19255) flgM 3672957..3673223 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  PUW21_RS19260 (PUW21_19260) yvyF 3673304..3673723 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PUW21_RS19265 (PUW21_19265) comFC 3673797..3674519 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  PUW21_RS19270 (PUW21_19270) comFB 3674483..3674779 (-) 297 WP_003227989.1 late competence protein ComFB -
  PUW21_RS19275 (PUW21_19275) comFA 3674839..3676230 (-) 1392 WP_274358131.1 ATP-dependent helicase ComFA Machinery gene
  PUW21_RS19280 (PUW21_19280) fakBA 3676336..3677181 (-) 846 WP_003244125.1 DegV family protein -
  PUW21_RS19285 (PUW21_19285) degU 3677279..3677968 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PUW21_RS19290 (PUW21_19290) degS 3678051..3679208 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PUW21_RS19295 (PUW21_19295) yvyE 3679425..3680078 (+) 654 WP_003227979.1 YigZ family protein -
  PUW21_RS19300 (PUW21_19300) tagV 3680078..3681253 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  PUW21_RS19305 (PUW21_19305) tagO 3681326..3682402 (-) 1077 WP_274358132.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=791005 PUW21_RS19285 WP_003219701.1 3677279..3677968(-) (degU) [Bacillus subtilis strain 21855]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=791005 PUW21_RS19285 WP_003219701.1 3677279..3677968(-) (degU) [Bacillus subtilis strain 21855]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1