Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUV54_RS15095 Genome accession   NZ_CP118166
Coordinates   3143136..3143591 (-) Length   151 a.a.
NCBI ID   WP_274493127.1    Uniprot ID   -
Organism   Hyphococcus flavus strain MCCC 1K03223     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3138136..3148591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV54_RS15065 (PUV54_15065) - 3139333..3139722 (-) 390 WP_274495237.1 hypothetical protein -
  PUV54_RS15070 (PUV54_15070) tnpA 3139689..3139841 (-) 153 Protein_2975 IS66 family insertion sequence element accessory protein TnpA -
  PUV54_RS15075 (PUV54_15075) - 3140036..3140569 (-) 534 WP_274493121.1 hypothetical protein -
  PUV54_RS15080 (PUV54_15080) - 3140733..3141713 (+) 981 WP_274493122.1 NAD-dependent epimerase/dehydratase family protein -
  PUV54_RS15085 (PUV54_15085) - 3141932..3142210 (-) 279 WP_274493124.1 hypothetical protein -
  PUV54_RS15090 (PUV54_15090) - 3142673..3143062 (+) 390 WP_274493126.1 hypothetical protein -
  PUV54_RS15095 (PUV54_15095) ssb 3143136..3143591 (-) 456 WP_274493127.1 single-stranded DNA-binding protein Machinery gene
  PUV54_RS15100 (PUV54_15100) uvrA 3143786..3146719 (+) 2934 WP_274493128.1 excinuclease ABC subunit UvrA -
  PUV54_RS15105 (PUV54_15105) - 3146738..3147757 (-) 1020 WP_274493129.1 toll/interleukin-1 receptor domain-containing protein -
  PUV54_RS15110 (PUV54_15110) - 3147929..3148279 (+) 351 WP_274493131.1 DUF2200 domain-containing protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16880.51 Da        Isoelectric Point: 5.0012

>NTDB_id=790927 PUV54_RS15095 WP_274493127.1 3143136..3143591(-) (ssb) [Hyphococcus flavus strain MCCC 1K03223]
MAGSVNKVILVGNLGADPEIRQTKDGRPIANLSVATSENWKDRNTGERREKTEWHRVVIFNEGLCRVVEQYLKKGSKVYL
EGQLQTRKWQDQNGNDRYSTEVVLQGFNSTLTMLDGRSGSSGGYDNNDNGMSDQSRSSGGQSYELDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=790927 PUV54_RS15095 WP_274493127.1 3143136..3143591(-) (ssb) [Hyphococcus flavus strain MCCC 1K03223]
ATGGCTGGCAGCGTCAATAAAGTGATTTTGGTGGGCAATCTGGGCGCTGATCCGGAAATTCGTCAGACAAAAGACGGCAG
ACCGATTGCAAACCTGTCTGTTGCGACTTCAGAGAACTGGAAAGACAGAAATACCGGCGAACGACGCGAAAAAACCGAAT
GGCACCGCGTTGTCATCTTTAACGAAGGTCTTTGCCGCGTTGTTGAGCAATATCTGAAGAAAGGTTCGAAGGTTTACCTC
GAAGGTCAGCTGCAAACACGTAAATGGCAGGATCAAAACGGCAATGACCGCTACTCAACAGAGGTTGTGCTGCAGGGATT
CAACTCGACATTGACGATGTTGGACGGTCGCAGCGGTTCAAGCGGCGGTTATGATAACAACGATAACGGAATGTCAGACC
AAAGCCGTTCTTCAGGCGGACAAAGTTATGAGTTGGATGACGACATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.399

100

0.543
  ssb Glaesserella parasuis strain SC1401

63.415

81.457

0.517
  ssb Neisseria gonorrhoeae MS11

42.953

98.675

0.424
  ssb Neisseria meningitidis MC58

48.333

79.47

0.384