Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraS   Type   Regulator
Locus tag   PTA87_RS04710 Genome accession   NZ_CP118163
Coordinates   970539..971582 (+) Length   347 a.a.
NCBI ID   WP_039644794.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SG-7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 965539..976582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTA87_RS04685 - 966423..967154 (+) 732 WP_039644786.1 type 1 glutamine amidotransferase -
  PTA87_RS04690 - 967266..968291 (-) 1026 WP_039644788.1 FUSC family protein -
  PTA87_RS04695 map 968585..969343 (+) 759 WP_107633460.1 type I methionyl aminopeptidase -
  PTA87_RS04700 - 969442..969828 (+) 387 WP_052257806.1 hypothetical protein -
  PTA87_RS04705 liaF 969841..970542 (+) 702 WP_107633459.1 cell wall-active antibiotics response protein LiaF -
  PTA87_RS04710 vraS 970539..971582 (+) 1044 WP_039644794.1 sensor histidine kinase Regulator
  PTA87_RS04715 vraR 971572..972201 (+) 630 WP_039644795.1 response regulator transcription factor Regulator
  PTA87_RS04720 - 972265..972834 (-) 570 WP_274316385.1 beta-class carbonic anhydrase -
  PTA87_RS04725 - 972869..974140 (-) 1272 WP_274316386.1 YihY/virulence factor BrkB family protein -
  PTA87_RS04730 - 974260..974535 (-) 276 WP_039644801.1 hypothetical protein -
  PTA87_RS04735 - 974542..975000 (-) 459 WP_039644802.1 low molecular weight protein-tyrosine-phosphatase -
  PTA87_RS04740 - 975133..975342 (+) 210 WP_039644804.1 DUF1128 family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39865.89 Da        Isoelectric Point: 4.8594

>NTDB_id=790862 PTA87_RS04710 WP_039644794.1 970539..971582(+) (vraS) [Staphylococcus hyicus strain SG-7]
MNQYVRSIGSMLILVYSLFTAFFFIDNVFTNIIFFQGMFYTQIFGIPVFLFLNLITIFLCIIVGSVLAYKNNQQSDWLKA
QIERAIEGETVGVNDQQIEIYLETLELYEALVPLNQELHRMRIKTQNLTNESYNMNDSKVQKIIEDERHRLARELHDSVS
QQLFAASMMLSAIKETPLDPPLNQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIQTLVSDLQRKVPLKVVQDI
GEFDVPKGMEDHLFRITQEAISNTLRHSKGTEVTVELLQREDYILLRIQDDGIGFNVDEKMEQSYGLKNMRERAMEIGAT
FHIVSLPDSGTRIEVKAPLDKEGHNDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=790862 PTA87_RS04710 WP_039644794.1 970539..971582(+) (vraS) [Staphylococcus hyicus strain SG-7]
ATGAATCAATATGTACGATCGATAGGTTCAATGCTAATACTTGTGTATAGTTTATTTACAGCTTTCTTTTTTATCGACAA
TGTTTTCACAAATATCATTTTTTTCCAAGGCATGTTTTATACGCAAATATTTGGGATTCCAGTATTTTTGTTTTTAAACC
TTATTACTATATTTTTATGTATTATCGTAGGAAGTGTGCTTGCATATAAAAACAATCAACAAAGCGATTGGTTGAAGGCG
CAAATTGAGCGTGCCATTGAAGGTGAAACGGTAGGTGTCAATGATCAACAAATCGAAATTTATCTAGAAACGTTAGAACT
TTATGAAGCATTAGTGCCACTTAATCAAGAATTACATCGCATGCGCATTAAAACACAAAATTTAACGAATGAGTCTTACA
ATATGAATGACTCAAAAGTACAAAAAATTATTGAGGATGAACGACATCGCCTTGCTAGAGAATTACATGATAGCGTGTCA
CAACAATTATTTGCGGCAAGCATGATGCTTTCAGCAATTAAAGAAACACCTTTAGATCCACCTTTGAACCAGCAAATACC
GACACTTGAAAAAATGGTACAGGATTCACAACTTGAAATGCGCGCACTCTTGTTACATTTACGACCTATAGGATTGAAGG
ACAAGTCATTAGGAGAAGGCATTCAAACTTTAGTTAGTGATCTTCAGCGTAAGGTACCTTTAAAAGTCGTGCAAGATATT
GGTGAGTTTGATGTTCCAAAAGGTATGGAAGATCATTTGTTTAGAATTACCCAAGAAGCCATTTCTAATACATTACGTCA
TTCTAAAGGGACTGAAGTGACCGTAGAATTATTACAACGTGAAGATTACATACTGTTACGTATTCAAGATGATGGTATTG
GCTTTAATGTTGATGAAAAAATGGAACAAAGCTATGGCTTGAAAAATATGCGTGAGCGCGCAATGGAAATAGGCGCTACA
TTTCATATCGTATCTTTACCTGACTCAGGAACGAGAATTGAAGTGAAAGCACCATTAGACAAGGAGGGGCACAATGACAA
TTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(250-340)

Histidine kinase (HisKA_3)

(147-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

81.556

100

0.816