Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7631_RS04915 Genome accession   NZ_CP131685
Coordinates   1029079..1029615 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 2016C04-116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1024079..1034615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7631_RS04895 (Q7631_04890) aphA 1024367..1025080 (+) 714 WP_001226933.1 acid phosphatase AphA -
  Q7631_RS04900 (Q7631_04895) yjbQ 1025191..1025607 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  Q7631_RS04905 (Q7631_04900) yjbR 1025611..1025967 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  Q7631_RS04910 (Q7631_04905) uvrA 1026002..1028824 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  Q7631_RS04915 (Q7631_04910) ssb 1029079..1029615 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  Q7631_RS04920 (Q7631_04915) yjcB 1029714..1029995 (-) 282 WP_001296643.1 YjcB family protein -
  Q7631_RS04925 (Q7631_04920) pdeC 1030424..1032010 (+) 1587 WP_001545711.1 c-di-GMP phosphodiesterase PdeC -
  Q7631_RS04930 (Q7631_04925) soxS 1032013..1032336 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  Q7631_RS04935 (Q7631_04930) soxR 1032422..1032886 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=790836 Q7631_RS04915 WP_000168305.1 1029079..1029615(+) (ssb) [Escherichia coli strain 2016C04-116]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=790836 Q7631_RS04915 WP_000168305.1 1029079..1029615(+) (ssb) [Escherichia coli strain 2016C04-116]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489