Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUP78_RS30300 Genome accession   NZ_CP118155
Coordinates   6728535..6729047 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain ATCC 17411     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6723535..6734047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP78_RS30285 (PUP78_30285) purD 6724380..6725630 (+) 1251 WP_124325620.1 phosphoribosylamine--glycine ligase -
  PUP78_RS30290 (PUP78_30290) - 6725680..6727074 (+) 1395 WP_164486056.1 MFS transporter -
  PUP78_RS30295 (PUP78_30295) - 6727071..6728462 (+) 1392 WP_124325622.1 amidase -
  PUP78_RS30300 (PUP78_30300) ssb 6728535..6729047 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  PUP78_RS30305 (PUP78_30305) - 6729057..6730451 (-) 1395 WP_106698751.1 MFS transporter -
  PUP78_RS30310 (PUP78_30310) uvrA 6730632..6733466 (+) 2835 WP_025807824.1 excinuclease ABC subunit UvrA -
  PUP78_RS30315 (PUP78_30315) bfr 6733560..6734024 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=790816 PUP78_RS30300 WP_009045846.1 6728535..6729047(-) (ssb) [Pseudomonas chlororaphis strain ATCC 17411]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=790816 PUP78_RS30300 WP_009045846.1 6728535..6729047(-) (ssb) [Pseudomonas chlororaphis strain ATCC 17411]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCACAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5