Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUP54_RS26225 Genome accession   NZ_CP118151
Coordinates   5762050..5762562 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain ATCC 9446     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5757050..5767562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP54_RS26210 (PUP54_26210) - 5757156..5758295 (+) 1140 WP_053262845.1 hypothetical protein -
  PUP54_RS26215 (PUP54_26215) - 5758306..5760702 (+) 2397 WP_053262846.1 hypothetical protein -
  PUP54_RS26220 (PUP54_26220) - 5760902..5761957 (+) 1056 WP_053262847.1 hypothetical protein -
  PUP54_RS26225 (PUP54_26225) ssb 5762050..5762562 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  PUP54_RS26230 (PUP54_26230) - 5762572..5763966 (-) 1395 WP_053262848.1 MFS transporter -
  PUP54_RS26235 (PUP54_26235) uvrA 5764147..5766981 (+) 2835 WP_007924172.1 excinuclease ABC subunit UvrA -
  PUP54_RS26240 (PUP54_26240) bfr 5767073..5767537 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=790709 PUP54_RS26225 WP_009045846.1 5762050..5762562(-) (ssb) [Pseudomonas chlororaphis strain ATCC 9446]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=790709 PUP54_RS26225 WP_009045846.1 5762050..5762562(-) (ssb) [Pseudomonas chlororaphis strain ATCC 9446]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGCTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGTCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGTGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5