Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PUP75_RS28225 | Genome accession | NZ_CP118145 |
| Coordinates | 6256076..6256588 (-) | Length | 170 a.a. |
| NCBI ID | WP_009045846.1 | Uniprot ID | A0AB33WX86 |
| Organism | Pseudomonas chlororaphis strain ATCC 17417 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 6233596..6255860 | 6256076..6256588 | flank | 216 |
Gene organization within MGE regions
Location: 6233596..6256588
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUP75_RS28115 (PUP75_28115) | - | 6233596..6234987 (+) | 1392 | WP_274335312.1 | amidase | - |
| PUP75_RS28120 (PUP75_28120) | - | 6235737..6236180 (-) | 444 | WP_274335313.1 | DUF6527 family protein | - |
| PUP75_RS28125 (PUP75_28125) | - | 6236177..6237367 (-) | 1191 | WP_274335314.1 | ThiF family adenylyltransferase | - |
| PUP75_RS28130 (PUP75_28130) | - | 6237342..6238091 (-) | 750 | WP_274335315.1 | multiubiquitin domain-containing protein | - |
| PUP75_RS28135 (PUP75_28135) | - | 6238305..6238676 (+) | 372 | WP_274335316.1 | helix-turn-helix domain-containing protein | - |
| PUP75_RS28140 (PUP75_28140) | - | 6238691..6239560 (+) | 870 | WP_274335317.1 | ImmA/IrrE family metallo-endopeptidase | - |
| PUP75_RS28145 (PUP75_28145) | - | 6239839..6240432 (-) | 594 | WP_274335318.1 | DUF4326 domain-containing protein | - |
| PUP75_RS28150 (PUP75_28150) | - | 6240429..6240872 (-) | 444 | WP_274335319.1 | DUF488 family protein | - |
| PUP75_RS28155 (PUP75_28155) | - | 6240882..6241565 (-) | 684 | WP_274335320.1 | dual OB domain-containing protein | - |
| PUP75_RS28160 (PUP75_28160) | - | 6241987..6242772 (+) | 786 | WP_274335322.1 | phage Gp37/Gp68 family protein | - |
| PUP75_RS28165 (PUP75_28165) | - | 6242801..6244024 (+) | 1224 | WP_274335323.1 | three-Cys-motif partner protein TcmP | - |
| PUP75_RS28170 (PUP75_28170) | - | 6244257..6245885 (-) | 1629 | WP_274335324.1 | UvrD-helicase domain-containing protein | - |
| PUP75_RS28175 (PUP75_28175) | - | 6245888..6247606 (-) | 1719 | WP_274335325.1 | ATP-dependent nuclease | - |
| PUP75_RS28180 (PUP75_28180) | - | 6247953..6248588 (+) | 636 | WP_274335326.1 | hypothetical protein | - |
| PUP75_RS28185 (PUP75_28185) | - | 6248826..6249172 (+) | 347 | Protein_5577 | bacteriophage T4 gp5 trimerisation domain-containing protein | - |
| PUP75_RS28190 (PUP75_28190) | - | 6249484..6249843 (+) | 360 | WP_097138597.1 | helix-turn-helix domain-containing protein | - |
| PUP75_RS28195 (PUP75_28195) | - | 6249969..6250409 (-) | 441 | WP_274335328.1 | hypothetical protein | - |
| PUP75_RS28200 (PUP75_28200) | - | 6250494..6250769 (+) | 276 | WP_274335329.1 | helix-turn-helix domain-containing protein | - |
| PUP75_RS28205 (PUP75_28205) | - | 6250805..6251197 (-) | 393 | WP_274335330.1 | hypothetical protein | - |
| PUP75_RS28210 (PUP75_28210) | - | 6251190..6253199 (-) | 2010 | WP_274335331.1 | integrase | - |
| PUP75_RS28215 (PUP75_28215) | - | 6253192..6254718 (-) | 1527 | WP_274335332.1 | site-specific integrase | - |
| PUP75_RS28220 (PUP75_28220) | - | 6254715..6255932 (-) | 1218 | WP_274335333.1 | site-specific integrase | - |
| PUP75_RS28225 (PUP75_28225) | ssb | 6256076..6256588 (-) | 513 | WP_009045846.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18934.07 Da Isoelectric Point: 5.9455
>NTDB_id=790560 PUP75_RS28225 WP_009045846.1 6256076..6256588(-) (ssb) [Pseudomonas chlororaphis strain ATCC 17417]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=790560 PUP75_RS28225 WP_009045846.1 6256076..6256588(-) (ssb) [Pseudomonas chlororaphis strain ATCC 17417]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.427 |
100 |
0.612 |
| ssb | Glaesserella parasuis strain SC1401 |
46.392 |
100 |
0.529 |
| ssb | Neisseria meningitidis MC58 |
48.864 |
100 |
0.506 |
| ssb | Neisseria gonorrhoeae MS11 |
48.295 |
100 |
0.5 |