Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PotMrB4_RS03515 Genome accession   NZ_AP022642
Coordinates   731584..732078 (+) Length   164 a.a.
NCBI ID   WP_044411072.1    Uniprot ID   A0A0D6S8T0
Organism   Metapseudomonas otitidis strain MrB4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 726584..737078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PotMrB4_RS03505 (PtoMrB4_06890) uvrA 727136..729970 (-) 2835 WP_044411066.1 excinuclease ABC subunit UvrA -
  PotMrB4_RS03510 (PtoMrB4_06900) - 730180..731574 (+) 1395 WP_172432511.1 MFS transporter -
  PotMrB4_RS03515 (PtoMrB4_06910) ssb 731584..732078 (+) 495 WP_044411072.1 single-stranded DNA-binding protein Machinery gene
  PotMrB4_RS03520 (PtoMrB4_06920) - 732295..733428 (+) 1134 WP_232060789.1 site-specific integrase -
  PotMrB4_RS03525 (PtoMrB4_06930) - 733884..734945 (+) 1062 WP_232060790.1 site-specific integrase -
  PotMrB4_RS03530 (PtoMrB4_06940) - 734938..736935 (+) 1998 WP_172432513.1 integrase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18210.11 Da        Isoelectric Point: 5.3027

>NTDB_id=79055 PotMrB4_RS03515 WP_044411072.1 731584..732078(+) (ssb) [Metapseudomonas otitidis strain MrB4]
MARGVNKVILVGNVGGDPEVRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGQMQLLGGRPGSDGDSAPRAPRPQREPQQSAPRESRPAPQPAAQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=79055 PotMrB4_RS03515 WP_044411072.1 731584..732078(+) (ssb) [Metapseudomonas otitidis strain MrB4]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCAACGTCGGCGGCGACCCTGAAGTCCGCTACATGCCCAACGGCAA
CGCCGTGACCAACATCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAGT
GGCACCGCGTGGTGTTCTTCGGCCGCCTCGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGTCAGGACGGCCAGGACCGCTACACCACCGAAATCGTCGTGGACATCAACGG
CCAGATGCAACTGCTCGGCGGTCGTCCCGGCAGCGATGGCGACTCCGCCCCGCGCGCCCCGCGTCCGCAGCGCGAGCCGC
AGCAGTCCGCCCCGCGCGAGTCCCGCCCGGCTCCGCAACCGGCCGCCCAGCCGGCCCCGGACTACGACAGCTTCGACGAC
GACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6S8T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.659

100

0.64
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.579
  ssb Neisseria meningitidis MC58

45.81

100

0.5
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.5

Multiple sequence alignment