Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUP62_RS28925 Genome accession   NZ_CP118143
Coordinates   6390861..6391373 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain ATCC 174182     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6385861..6396373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP62_RS28900 (PUP62_28900) - 6385949..6386944 (+) 996 WP_274330635.1 lysylphosphatidylglycerol synthase domain-containing protein -
  PUP62_RS28905 (PUP62_28905) - 6387028..6387783 (-) 756 WP_274330637.1 alpha/beta hydrolase family protein -
  PUP62_RS28910 (PUP62_28910) - 6387773..6388882 (-) 1110 WP_274330639.1 DUF3182 family protein -
  PUP62_RS28915 (PUP62_28915) - 6389065..6390063 (-) 999 WP_274330641.1 GlxA family transcriptional regulator -
  PUP62_RS28920 (PUP62_28920) - 6390167..6390721 (+) 555 WP_274330643.1 cysteine hydrolase family protein -
  PUP62_RS28925 (PUP62_28925) ssb 6390861..6391373 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  PUP62_RS28930 (PUP62_28930) - 6391383..6392777 (-) 1395 WP_062824453.1 MFS transporter -
  PUP62_RS28935 (PUP62_28935) uvrA 6392958..6395792 (+) 2835 WP_007924172.1 excinuclease ABC subunit UvrA -
  PUP62_RS28940 (PUP62_28940) bfr 6395884..6396348 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=790508 PUP62_RS28925 WP_009045846.1 6390861..6391373(-) (ssb) [Pseudomonas chlororaphis strain ATCC 174182]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=790508 PUP62_RS28925 WP_009045846.1 6390861..6391373(-) (ssb) [Pseudomonas chlororaphis strain ATCC 174182]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5