Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUP76_RS13800 Genome accession   NZ_CP118135
Coordinates   3005641..3006153 (+) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain NCCB 820532     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3000641..3011153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP76_RS13785 (PUP76_13785) bfr 3000666..3001130 (+) 465 WP_007924173.1 bacterioferritin -
  PUP76_RS13790 (PUP76_13790) uvrA 3001222..3004056 (-) 2835 WP_007924172.1 excinuclease ABC subunit UvrA -
  PUP76_RS13795 (PUP76_13795) - 3004237..3005631 (+) 1395 WP_062824453.1 MFS transporter -
  PUP76_RS13800 (PUP76_13800) ssb 3005641..3006153 (+) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  PUP76_RS13805 (PUP76_13805) - 3006226..3007617 (-) 1392 WP_274302016.1 amidase -
  PUP76_RS13810 (PUP76_13810) - 3007614..3009005 (-) 1392 WP_274302017.1 MFS transporter -
  PUP76_RS13815 (PUP76_13815) purD 3009058..3010308 (-) 1251 WP_274302018.1 phosphoribosylamine--glycine ligase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=790295 PUP76_RS13800 WP_009045846.1 3005641..3006153(+) (ssb) [Pseudomonas chlororaphis strain NCCB 820532]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=790295 PUP76_RS13800 WP_009045846.1 3005641..3006153(+) (ssb) [Pseudomonas chlororaphis strain NCCB 820532]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5