Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   PUW71_RS08280 Genome accession   NZ_CP118053
Coordinates   1616529..1618508 (-) Length   659 a.a.
NCBI ID   WP_150888769.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1611529..1623508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS08260 (PUW71_08260) amiF 1611720..1612643 (-) 924 WP_024052698.1 ATP-binding cassette domain-containing protein Regulator
  PUW71_RS08265 (PUW71_08265) amiE 1612654..1613721 (-) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  PUW71_RS08270 (PUW71_08270) amiD 1613730..1614656 (-) 927 WP_024052699.1 oligopeptide ABC transporter permease OppC Regulator
  PUW71_RS08275 (PUW71_08275) amiC 1614656..1616152 (-) 1497 WP_024052700.1 ABC transporter permease Regulator
  PUW71_RS08280 (PUW71_08280) amiA3 1616529..1618508 (-) 1980 WP_150888769.1 peptide ABC transporter substrate-binding protein Regulator
  PUW71_RS08285 (PUW71_08285) amiA3 1618706..1620682 (-) 1977 WP_024052702.1 peptide ABC transporter substrate-binding protein Regulator
  PUW71_RS08290 (PUW71_08290) - 1620849..1621532 (-) 684 WP_101749772.1 phenylalanine--tRNA ligase beta subunit-related protein -
  PUW71_RS08295 (PUW71_08295) - 1621698..1623308 (-) 1611 WP_024052704.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73177.77 Da        Isoelectric Point: 7.8680

>NTDB_id=789623 PUW71_RS08280 WP_150888769.1 1616529..1618508(-) (amiA3) [Streptococcus anginosus strain VSI40]
MKKSKIITLAALALLATGALAACSGSKTSSGNKTFSYIYEQDPDNLNYLTTGKAATANLTSNAIDGLLENDRYGNLVPSV
AKDWTVSKDGLTYTYTLRKGVKWYTSEGEEYAEVKAQDFVTGLKYAADNKSEAIYLVQDSIKGLDAYMKGENKDFSSVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSLLYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDNIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYKHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKSFGELVKEKLVGYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGESTKTYLGFDAGTNNAAAAQVGMNEYEKLLNEAEKETNN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFSNAFAWSGNKGNSETILYKYLEIQDEPVTQNQYKKAMEKWN
KKRTESNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=789623 PUW71_RS08280 WP_150888769.1 1616529..1618508(-) (amiA3) [Streptococcus anginosus strain VSI40]
ATGAAGAAAAGTAAAATCATTACCCTTGCAGCGCTAGCCTTGCTTGCAACAGGAGCTCTAGCAGCTTGTTCTGGCTCTAA
AACAAGCTCGGGGAACAAAACATTCTCATATATTTATGAGCAAGATCCAGATAACCTGAACTATTTGACAACTGGGAAAG
CAGCCACTGCAAATCTTACCAGTAATGCCATTGACGGACTCTTGGAAAATGACCGTTACGGAAATCTAGTTCCTTCTGTA
GCGAAGGATTGGACAGTCTCCAAGGACGGCTTGACTTATACTTATACACTTCGTAAGGGTGTGAAATGGTACACATCAGA
GGGCGAAGAGTATGCAGAAGTTAAGGCACAAGACTTTGTGACAGGCTTAAAATATGCTGCGGATAATAAATCTGAAGCTA
TTTACTTGGTGCAAGATTCAATCAAAGGCTTGGATGCTTACATGAAGGGTGAAAATAAAGATTTCTCTTCTGTCGGTATC
AAAGCAGTTGATGATTACACGGTTCAATACACGCTTAATCGACCAGAAAGCTTTTGGAATTCTAAAACAACAATGGGCGT
TCTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCACAAGCAACAGACCCATCTAGTCTTCTTT
ATAATGGTCCATACTTGCTGAAATCTATCACAGCGAAATCATCTGTTGAATTTGCTAAAAATCCAAACTACTGGGATAAG
AAGAATGTGCACATTGACAACATCAAGTTGTCCTACTATGATGGTCAAGACCAAGACAAACTTGCTAAAGGATTTAGTGA
TGGCTCATTTACCAATGCCAAAGTATTTCCAACAAGTCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCGCAAGATGCAACGACTTACCTAGTAGCTACAAACATTGACCGTCAATCTTACAAACATACTTCAAAGACA
ACAGATGCTCAAAAGACTTCTACTAAGAAAGCTTTGCTAAACAAGGATTTCCGTCAAGCGATTACCTTTGCATTTGACCG
CACAGCTTATGCATCACAGGTGAATGGTAAAGACGGTGCGACGAAGATGCTCCGTAATCTCTTTGTACCGCCAACATTTG
TTCAAACAGATGACAAGAGCTTTGGAGAATTGGTCAAAGAAAAATTAGTTGGTTATGATGAAAGTTGGAAAGATGTCAAC
TTAAATGATGCGCAAGATGGTCTTTACAATCCAACTAAAGCTAAAGAAAAATTAGCGAAAGCGAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCAATCCACATTGATATGCCAGTTGACCAAACAGCAACTAATAAAGTTCAACGTGTGCAATCAT
TGAAACAATCGATTGAAAAAAATCTTGGGAAAGAAAATGTTGTGATTGATATTCAACAAATGTCTAAAGACGACGTGAAT
AATATCACTTACTTTGCCGAATCCGCAGCTGCAGAAGATTGGGATCTTTCTGATAATGTTGGTTGGAGTCCAGATTTCCA
AGACCCATCTACCTATCTTGATGTTATCAAACCTTCAAGCGGTGAAAGCACTAAGACTTATCTAGGATTTGATGCAGGCA
CGAACAACGCTGCTGCAGCACAAGTTGGTATGAACGAATATGAAAAGTTGTTGAATGAGGCTGAAAAAGAAACCAACAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCCCAAGCTTGGTTGACTGATAATGCATTGGTCATTCCAACAACAACACT
AACGGGTCGCCCAATTCTTTCTCGTACAGTACCATTTAGTAATGCCTTTGCTTGGTCAGGAAACAAGGGAAATAGTGAAA
CAATTCTCTATAAATACCTTGAAATCCAAGATGAGCCTGTGACTCAAAATCAATACAAGAAGGCCATGGAAAAATGGAAT
AAAAAGCGCACAGAGTCTAATAAAAAGGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.212

100

0.613
  amiA3 Streptococcus thermophilus LMG 18311

60.606

100

0.607
  amiA Streptococcus salivarius strain HSISS4

60.152

100

0.602