Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   PUW71_RS08275 Genome accession   NZ_CP118053
Coordinates   1614656..1616152 (-) Length   498 a.a.
NCBI ID   WP_024052700.1    Uniprot ID   A0A412PMP3
Organism   Streptococcus anginosus strain VSI40     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609656..1621152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS08245 (PUW71_08245) - 1609716..1610681 (+) 966 WP_003031743.1 LacI family DNA-binding transcriptional regulator -
  PUW71_RS10135 - 1610755..1611577 (-) 823 Protein_1583 Cof-type HAD-IIB family hydrolase -
  PUW71_RS08260 (PUW71_08260) amiF 1611720..1612643 (-) 924 WP_024052698.1 ATP-binding cassette domain-containing protein Regulator
  PUW71_RS08265 (PUW71_08265) amiE 1612654..1613721 (-) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  PUW71_RS08270 (PUW71_08270) amiD 1613730..1614656 (-) 927 WP_024052699.1 oligopeptide ABC transporter permease OppC Regulator
  PUW71_RS08275 (PUW71_08275) amiC 1614656..1616152 (-) 1497 WP_024052700.1 ABC transporter permease Regulator
  PUW71_RS08280 (PUW71_08280) amiA3 1616529..1618508 (-) 1980 WP_150888769.1 peptide ABC transporter substrate-binding protein Regulator
  PUW71_RS08285 (PUW71_08285) amiA3 1618706..1620682 (-) 1977 WP_024052702.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55808.92 Da        Isoelectric Point: 10.0089

>NTDB_id=789622 PUW71_RS08275 WP_024052700.1 1614656..1616152(-) (amiC) [Streptococcus anginosus strain VSI40]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKANYENTIFERMGYIDYYDTKELQEKAS
KENSSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYI
CIENDPAIGWSVVGSGTRHKYLLYFNSQFPFIHQNFVRLNLGTSYPTYANLPVLQVISQGQGQTKTSEVQFPTGKKTSSV
NIYTRTYKSPKQADARDVANYGKDDPYTATESNYQYPSMIVSSSIVGVIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSSIPNSVIGVITGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTVLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=789622 PUW71_RS08275 WP_024052700.1 1614656..1616152(-) (amiC) [Streptococcus anginosus strain VSI40]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACGCTGACTTACACCATTAT
CTATACCATGGTGCCTAGGAAGTTGATTTTCAAACAGGACCCAAACTATAACAAAATAGCGACAACTCCTGATAAAAAAG
CCAATTACGAAAATACGATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTGCAAGAAAAAGCTAGT
AAAGAGAATTCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGCTGGGACG
CGGTTGGAAATTGCAGCAATTTAAAGAAAGCAAGCAATTTTATGCAACTCGTGAAGTTCCAGTTTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGACCATACCGGTGCTGTGAAAGATGCTTCTAATCCGAATTTGAAGCGTTATATT
TGCATTGAAAATGATCCTGCCATTGGTTGGTCTGTTGTTGGTTCTGGAACGAGACATAAATATTTATTGTACTTCAATAG
TCAGTTTCCATTTATCCATCAAAATTTTGTAAGATTAAATCTAGGAACTTCTTATCCGACCTATGCTAATCTTCCTGTTT
TACAGGTTATTTCACAAGGGCAAGGTCAAACGAAGACATCAGAAGTTCAATTTCCAACAGGAAAGAAAACATCATCTGTT
AATATTTATACGCGTACATATAAGTCTCCAAAACAAGCCGATGCACGCGATGTTGCTAATTACGGAAAAGATGATCCCTA
TACGGCGACAGAGAGCAATTATCAATATCCATCTATGATTGTGAGTTCTTCTATTGTTGGGGTGATTGGTTTGGCCTTGT
CATACTTAATCGCCGTTCCACTTGGATCTTATATGGCTCGCTTTAAGAATACATTGTTTGATAGTATTTCAACCGGTGCT
TTGACTTTCTTAATGTCACTGCCAACTATTGCCTTGGTTTATATCATTCGCTTGATTGGTTCAGCGATTGGTTTGCCTGA
TTCATTCCCTATTTTGGGAGCAGGTGATTGGCGCTCTTATGTGTTGCCGGCAGTCATTCTTGGACTCTTGAGTGCGCCTT
GGACAGCCGTTTGGATTCGTCGTTATATGATTGACTTGCAATCACAAGATTTTGTTCGTTTTGCACGGGCAAAAGGTCTT
TCTGAAAAAGAAATTTCAAATAAACATATTTTCAAAAATGCCATGGTGCCACTTGTATCCAGCATTCCAAACTCAGTTAT
TGGGGTTATTACAGGTGCAACTTTGACTGAAACAGTCTTCGCTTTCCCTGGTATGGGTAAGATGTTGATTGACTCTGTTA
AAGCTTCAAACAATTCTATGGTCGTTGGTCTTGTCTTTATCTTTACTTGTCTTTCTATCTTCGCTCTTTTATTGGGTGAT
ATTCTGATGACAGTGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PMP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

79.92

100

0.799
  amiC Streptococcus thermophilus LMG 18311

79.518

100

0.795
  amiC Streptococcus thermophilus LMD-9

79.317

100

0.793