Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7650_RS03280 Genome accession   NZ_CP131626
Coordinates   616326..616850 (+) Length   174 a.a.
NCBI ID   WP_003695064.1    Uniprot ID   Q5F7Y0
Organism   Neisseria gonorrhoeae strain 2020S05-258     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 611326..621850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7650_RS03255 (Q7650_03255) - 611742..612545 (+) 804 WP_341979019.1 opacity family porin -
  Q7650_RS03260 (Q7650_03260) - 612910..613400 (+) 491 Protein_632 transposase -
  Q7650_RS03265 (Q7650_03265) - 613437..613703 (+) 267 Protein_633 transposase -
  Q7650_RS03270 (Q7650_03270) - 614205..614828 (+) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  Q7650_RS03275 (Q7650_03275) - 614940..616322 (+) 1383 WP_003698298.1 MFS transporter -
  Q7650_RS03280 (Q7650_03280) ssb 616326..616850 (+) 525 WP_003695064.1 single-stranded DNA-binding protein Machinery gene
  Q7650_RS03285 (Q7650_03285) - 617223..618146 (+) 924 WP_010360332.1 DMT family transporter -
  Q7650_RS03290 (Q7650_03290) fumC 618211..619599 (-) 1389 WP_003688225.1 class II fumarate hydratase -
  Q7650_RS03295 (Q7650_03295) recP/tkt 619743..621722 (-) 1980 WP_003688227.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19448.66 Da        Isoelectric Point: 5.8313

>NTDB_id=789535 Q7650_RS03280 WP_003695064.1 616326..616850(+) (ssb) [Neisseria gonorrhoeae strain 2020S05-258]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=789535 Q7650_RS03280 WP_003695064.1 616326..616850(+) (ssb) [Neisseria gonorrhoeae strain 2020S05-258]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F7Y0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

100

100

1
  ssb Neisseria meningitidis MC58

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

44.505

100

0.466