Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUW62_RS09075 Genome accession   NZ_CP118046
Coordinates   1792293..1792784 (-) Length   163 a.a.
NCBI ID   WP_070672620.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI52     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1787293..1797784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW62_RS09060 (PUW62_09060) - 1790200..1791144 (+) 945 WP_003030529.1 magnesium transporter CorA family protein -
  PUW62_RS09065 (PUW62_09065) - 1791160..1791837 (+) 678 WP_024052425.1 DUF1129 family protein -
  PUW62_RS09070 (PUW62_09070) rpsR 1792017..1792256 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  PUW62_RS09075 (PUW62_09075) ssb 1792293..1792784 (-) 492 WP_070672620.1 single-stranded DNA-binding protein Machinery gene
  PUW62_RS09080 (PUW62_09080) rpsF 1792796..1793086 (-) 291 WP_003026325.1 30S ribosomal protein S6 -
  PUW62_RS09085 (PUW62_09085) - 1793354..1794396 (+) 1043 Protein_1747 bifunctional glycosyltransferase family 2/GtrA family protein -
  PUW62_RS09090 (PUW62_09090) - 1794393..1795298 (+) 906 WP_070672624.1 phosphodiester glycosidase family protein -
  PUW62_RS09095 (PUW62_09095) - 1795273..1795692 (+) 420 WP_070672627.1 hypothetical protein -
  PUW62_RS09100 (PUW62_09100) - 1795919..1796521 (-) 603 WP_024052430.1 histidine phosphatase family protein -
  PUW62_RS09105 (PUW62_09105) - 1796522..1797115 (-) 594 WP_024052431.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18279.98 Da        Isoelectric Point: 4.9008

>NTDB_id=789495 PUW62_RS09075 WP_070672620.1 1792293..1792784(-) (ssb) [Streptococcus anginosus strain VSI52]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYTYNNFGNSSSNFGNSTSANQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=789495 PUW62_RS09075 WP_070672620.1 1792293..1792784(-) (ssb) [Streptococcus anginosus strain VSI52]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACTCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTCATTAACGTTGTAATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTCATCGGAATTACTGGTCGGATTCAGACACGT
AACTACGAAAACCAGCAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCTGACAATTTCCAACTGCTAGAAAGTCGTGC
CAGCCGTGAGGGTCAATCTTCTGGTGGCTACACTTATAATAATTTCGGAAATTCATCATCCAACTTTGGGAACTCAACTT
CTGCCAATCAAGTACCCAACTTTTCTCGTGATGAAAATCCATTTGGTAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.818

100

0.613
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368