Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   PUW46_RS02540 Genome accession   NZ_CP118044
Coordinates   531572..532141 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain VSI56     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 526572..537141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW46_RS02515 (PUW46_02515) cysE 527785..528432 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  PUW46_RS02520 (PUW46_02520) cysS 528416..529816 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  PUW46_RS02525 (PUW46_02525) - 529809..530213 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  PUW46_RS02530 (PUW46_02530) rlmB 530221..530967 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PUW46_RS02535 (PUW46_02535) - 530967..531491 (+) 525 WP_000664738.1 NYN domain-containing protein -
  PUW46_RS02540 (PUW46_02540) sigH 531572..532141 (+) 570 WP_000872873.1 RNA polymerase sigma factor Regulator
  PUW46_RS02545 (PUW46_02545) rpmG 532256..532399 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  PUW46_RS02550 (PUW46_02550) secE 532455..532637 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  PUW46_RS02555 (PUW46_02555) nusG 532650..533198 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  PUW46_RS02560 (PUW46_02560) rplK 533379..533801 (+) 423 WP_001085791.1 50S ribosomal protein L11 -
  PUW46_RS02565 (PUW46_02565) rplA 534009..534701 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  PUW46_RS02570 (PUW46_02570) rplJ 534973..535473 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  PUW46_RS02575 (PUW46_02575) rplL 535516..535884 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  PUW46_RS02580 (PUW46_02580) - 536059..536667 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=789401 PUW46_RS02540 WP_000872873.1 531572..532141(+) (sigH) [Staphylococcus aureus strain VSI56]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=789401 PUW46_RS02540 WP_000872873.1 531572..532141(+) (sigH) [Staphylococcus aureus strain VSI56]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984