Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   PUW70_RS03135 Genome accession   NZ_CP118029
Coordinates   605009..606040 (+) Length   343 a.a.
NCBI ID   WP_024051954.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 600009..611040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW70_RS03115 (PUW70_03115) - 600284..602275 (+) 1992 WP_024051957.1 PRD domain-containing protein -
  PUW70_RS03120 (PUW70_03120) - 602288..602605 (+) 318 WP_021001470.1 PTS cellobiose transporter subunit IIA -
  PUW70_RS03125 (PUW70_03125) - 602628..603134 (+) 507 WP_024051956.1 hypothetical protein -
  PUW70_RS03130 (PUW70_03130) celB 603174..604517 (+) 1344 WP_024051955.1 PTS cellobiose transporter subunit IIC -
  PUW70_RS03135 (PUW70_03135) coiA 605009..606040 (+) 1032 WP_024051954.1 competence protein CoiA family protein Machinery gene
  PUW70_RS03140 (PUW70_03140) pepF 605992..607794 (+) 1803 WP_070241593.1 oligoendopeptidase F Regulator
  PUW70_RS03145 (PUW70_03145) - 607796..608479 (+) 684 WP_024051952.1 O-methyltransferase -
  PUW70_RS03150 (PUW70_03150) prsA 608586..609525 (+) 940 Protein_581 peptidylprolyl isomerase PrsA -
  PUW70_RS03155 (PUW70_03155) - 609663..610232 (+) 570 WP_081333904.1 LURP-one-related family protein -

Sequence


Protein


Download         Length: 343 a.a.        Molecular weight: 40729.80 Da        Isoelectric Point: 9.1452

>NTDB_id=789239 PUW70_RS03135 WP_024051954.1 605009..606040(+) (coiA) [Streptococcus anginosus strain VSI68]
MLMACQENGKMLNAVEDTVNPLDRFLCPACKEAVRFKNGKVMRSHFAHISLKNCHFSTENESAEHLNLKTALFTWARKSN
HAIQVEAYLPELQQIADLLVEKQIALEVQCSSLSQKRLKERTDSYRQHGYRVFWLLGKKLWLKDSLTNLQKDFLYFSQNM
GFHLWELDEQQQLLRLKYLIHEDLHGKVQYKEKSFAFGKGNLLDIFRQPFCKQEMTSFLAKEDKNICSYVRQQLYYQQPK
WMKWQAELYQTGDNLLTKTASDFYPQVQPVRSSSFCQIFQDLTPYYQQFSAYYEKEKNKNFQILYPPAFYAKIFGNIYDR
IGRTEEILWQNKEMKLKKNTLGT

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=789239 PUW70_RS03135 WP_024051954.1 605009..606040(+) (coiA) [Streptococcus anginosus strain VSI68]
ATGTTAATGGCTTGTCAGGAAAACGGAAAAATGCTAAATGCTGTGGAAGATACGGTAAATCCGTTGGATAGGTTTCTCTG
CCCGGCTTGTAAGGAAGCGGTGCGATTTAAGAATGGCAAGGTGATGCGATCGCATTTTGCTCATATTTCCTTGAAAAACT
GCCATTTTTCTACGGAAAATGAAAGTGCAGAGCACCTAAATCTGAAAACTGCTTTGTTTACTTGGGCTAGAAAATCCAAT
CATGCGATTCAAGTAGAAGCTTATTTACCAGAATTGCAGCAAATCGCAGATTTGTTAGTTGAAAAACAAATTGCGCTTGA
AGTTCAGTGTAGCTCGCTTAGTCAAAAACGCTTAAAAGAGCGTACGGACAGTTATCGTCAGCATGGTTATCGCGTCTTTT
GGCTCTTGGGAAAGAAACTTTGGCTGAAAGATTCCTTGACCAATTTACAAAAGGACTTTCTCTATTTCAGTCAAAATATG
GGCTTTCATCTATGGGAATTAGACGAACAGCAACAGCTCTTGAGGCTTAAATACTTGATTCATGAAGATTTGCATGGCAA
GGTTCAGTATAAGGAGAAAAGTTTTGCTTTTGGTAAAGGAAACCTTTTAGACATCTTTCGTCAGCCATTCTGCAAGCAGG
AAATGACGAGTTTTCTGGCAAAAGAAGATAAAAATATTTGCAGTTATGTGCGCCAGCAGCTCTATTATCAGCAGCCCAAA
TGGATGAAATGGCAGGCAGAATTGTATCAAACGGGTGATAATTTATTAACCAAAACGGCTAGTGACTTTTACCCGCAAGT
CCAACCTGTTCGTTCCAGCTCTTTCTGCCAGATTTTTCAAGATCTCACACCTTATTACCAGCAATTTTCAGCTTATTATG
AAAAAGAAAAAAATAAAAATTTCCAAATTCTCTATCCTCCAGCTTTTTATGCAAAGATTTTTGGCAATATTTATGATAGA
ATAGGAAGGACGGAGGAAATTTTATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.185

91.545

0.487

  coiA Streptococcus pneumoniae Rx1

52.548

91.545

0.481

  coiA Streptococcus pneumoniae D39

52.548

91.545

0.481

  coiA Streptococcus pneumoniae R6

52.548

91.545

0.481

  coiA Streptococcus pneumoniae TIGR4

52.229

91.545

0.478

  coiA Lactococcus lactis subsp. cremoris KW2

43.827

94.461

0.414