Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PT671_RS12805 Genome accession   NZ_CP118021
Coordinates   2596514..2597236 (+) Length   240 a.a.
NCBI ID   WP_013308058.1    Uniprot ID   E0U4A6
Organism   Bacillus spizizenii strain B-354     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2591514..2602236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS12780 degS 2591823..2592980 (+) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator
  PT671_RS12785 degU 2593063..2593752 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PT671_RS12790 - 2593850..2594695 (+) 846 WP_003219702.1 DegV family protein -
  PT671_RS12795 comFA 2594803..2596185 (+) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  PT671_RS12800 comFB 2596254..2596550 (+) 297 WP_003219707.1 late competence protein ComFB -
  PT671_RS12805 comFC 2596514..2597236 (+) 723 WP_013308058.1 ComF family protein Machinery gene
  PT671_RS12810 - 2597309..2597728 (+) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  PT671_RS12815 flgM 2597809..2598075 (+) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  PT671_RS12820 flgN 2598091..2598573 (+) 483 WP_003219714.1 flagellar protein FlgN -
  PT671_RS12825 flgK 2598592..2600115 (+) 1524 WP_003219716.1 flagellar hook-associated protein FlgK -
  PT671_RS12830 flgL 2600125..2601021 (+) 897 WP_003219718.1 flagellar hook-associated protein FlgL -
  PT671_RS12835 - 2601068..2601643 (+) 576 WP_003219720.1 DUF6470 family protein -
  PT671_RS12840 fliW 2601664..2602095 (+) 432 WP_003219723.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27297.64 Da        Isoelectric Point: 9.4915

>NTDB_id=789165 PT671_RS12805 WP_013308058.1 2596514..2597236(+) (comFC) [Bacillus spizizenii strain B-354]
MPNEAGGGIYKLICLLCDSPFSQAITWRALFLLKPEEKVCHTCRSKLKKITGHICTLCGRPQSVHAVCKDCEAWKSRVSD
SLLLRQNRSVYTYNDVMKETLSRFKFRGDAEIINAFKSDFSSTFSQVYPDKHFVLVPIPLSKEREEERGFNQARLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGRAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=789165 PT671_RS12805 WP_013308058.1 2596514..2597236(+) (comFC) [Bacillus spizizenii strain B-354]
ATGCCAAATGAAGCAGGAGGAGGCATTTATAAACTGATCTGTCTATTATGCGATTCGCCATTTTCTCAAGCTATTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGAAGAAAAGGTCTGCCATACCTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCACCCTGTGCGGCAGACCTCAATCCGTTCATGCGGTATGCAAAGATTGCGAAGCATGGAAATCAAGAGTCAGTGAC
AGCTTGCTGCTGCGCCAAAACCGTTCAGTTTACACATATAATGATGTGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGTGATTTTTCTTCAACCTTTTCACAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTTAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACGGCTCCTGGCAGAATGTTTA
GACCGGCCTATCCACCACCCCCTCATCCGCTTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGTCTGCTTTC
AGCGCGTATTTTTGATACAAAAAACAACTCAGCTGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAGAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0U4A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.417

100

0.904