Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PT671_RS12785 Genome accession   NZ_CP118021
Coordinates   2593063..2593752 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus spizizenii strain B-354     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2588063..2598752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS12765 - 2588680..2589756 (+) 1077 WP_003219687.1 MraY family glycosyltransferase -
  PT671_RS12770 - 2589830..2590954 (-) 1125 WP_003219689.1 LCP family protein -
  PT671_RS12775 - 2590954..2591607 (-) 654 WP_003219692.1 YigZ family protein -
  PT671_RS12780 degS 2591823..2592980 (+) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator
  PT671_RS12785 degU 2593063..2593752 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PT671_RS12790 - 2593850..2594695 (+) 846 WP_003219702.1 DegV family protein -
  PT671_RS12795 comFA 2594803..2596185 (+) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  PT671_RS12800 comFB 2596254..2596550 (+) 297 WP_003219707.1 late competence protein ComFB -
  PT671_RS12805 comFC 2596514..2597236 (+) 723 WP_013308058.1 ComF family protein Machinery gene
  PT671_RS12810 - 2597309..2597728 (+) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  PT671_RS12815 flgM 2597809..2598075 (+) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  PT671_RS12820 flgN 2598091..2598573 (+) 483 WP_003219714.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=789163 PT671_RS12785 WP_003219701.1 2593063..2593752(+) (degU) [Bacillus spizizenii strain B-354]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=789163 PT671_RS12785 WP_003219701.1 2593063..2593752(+) (degU) [Bacillus spizizenii strain B-354]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATCGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCCTACCTTCATCCGAAGGTTACTCACA
ATCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAGCATGAGGTCTATCCTGAAATCCGC
AGACCATTACATATTTTAACTCGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTGAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1