Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PT671_RS12795 Genome accession   NZ_CP118021
Coordinates   2594803..2596185 (+) Length   460 a.a.
NCBI ID   WP_079996654.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2589803..2601185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS12770 - 2589830..2590954 (-) 1125 WP_003219689.1 LCP family protein -
  PT671_RS12775 - 2590954..2591607 (-) 654 WP_003219692.1 YigZ family protein -
  PT671_RS12780 degS 2591823..2592980 (+) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator
  PT671_RS12785 degU 2593063..2593752 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PT671_RS12790 - 2593850..2594695 (+) 846 WP_003219702.1 DegV family protein -
  PT671_RS12795 comFA 2594803..2596185 (+) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  PT671_RS12800 comFB 2596254..2596550 (+) 297 WP_003219707.1 late competence protein ComFB -
  PT671_RS12805 comFC 2596514..2597236 (+) 723 WP_013308058.1 ComF family protein Machinery gene
  PT671_RS12810 - 2597309..2597728 (+) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  PT671_RS12815 flgM 2597809..2598075 (+) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  PT671_RS12820 flgN 2598091..2598573 (+) 483 WP_003219714.1 flagellar protein FlgN -
  PT671_RS12825 flgK 2598592..2600115 (+) 1524 WP_003219716.1 flagellar hook-associated protein FlgK -
  PT671_RS12830 flgL 2600125..2601021 (+) 897 WP_003219718.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52001.04 Da        Isoelectric Point: 9.5507

>NTDB_id=789164 PT671_RS12795 WP_079996654.1 2594803..2596185(+) (comFA) [Bacillus spizizenii strain B-354]
MIVPAEKNISFSKELQQTLQSRHLLRTELPFSDELIEWHTENGYIAAQNSISINKRGYQCNRCGQNDQRYFSFYPSSGKN
RLYCRSCVMMGRVSEDVLLYSWIGEDEQNWQQIKLTWDGKLSSGQQKAANVLIDAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRIKAAFQCADISALYGGSDDKGCLSPLMISTTHQLLRYKGAFDVIIIDEVDAFPY
SADQTLQFAVQKARKKSSTLVYVSATPSQELKRKTLNGQLYSVRIPARHHQKPLPEPRFLWCGNWKKKLYRNKIPLAVKR
WIEFHVKEGRPVFLFVPSVSVLEKAVACFKDVICRAAAVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTIPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEHADGDVIFFHYGKTKSMLDARKHIKEMNALAAKKE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=789164 PT671_RS12795 WP_079996654.1 2594803..2596185(+) (comFA) [Bacillus spizizenii strain B-354]
CTGATTGTGCCAGCTGAAAAGAACATTTCTTTTTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGAAC
CGAACTCCCATTTTCCGATGAGTTGATTGAATGGCATACCGAGAATGGATATATCGCAGCACAAAACTCTATATCTATAA
ATAAACGGGGGTATCAGTGTAATAGGTGCGGCCAAAATGATCAGCGGTATTTTTCTTTTTACCCCTCATCTGGAAAGAAT
CGGCTGTATTGTCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGATGTTCTTTTATATTCGTGGATAGGAGAGGATGA
ACAAAACTGGCAACAAATAAAGCTGACATGGGATGGCAAGCTCTCAAGCGGACAGCAAAAAGCCGCCAATGTCTTAATTG
ATGCAATATCAAAAAAAGAAGAGCTCCTCATTTGGGCAGTTTGCGGCGCTGGGAAAACAGAGATGTTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGGTTGCGTGTGTGTATTGCGACACCCCGCACCGATGTGGTATTAGAGCTTGCTCCTAGAAT
TAAGGCTGCCTTTCAGTGTGCTGACATTTCAGCACTTTACGGAGGAAGTGATGACAAAGGGTGTTTATCTCCGCTTATGA
TTTCCACCACACATCAGCTTTTGCGATATAAAGGCGCATTCGACGTTATAATCATTGATGAAGTTGATGCTTTTCCGTAT
TCTGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCTAGAAAGAAAAGCAGCACCCTTGTTTATGTAAGTGCAACACC
TTCTCAAGAATTAAAAAGAAAAACACTGAACGGACAGTTATATTCAGTTCGTATTCCAGCCAGACACCATCAGAAACCTT
TGCCTGAACCGCGCTTTCTATGGTGTGGAAACTGGAAAAAGAAATTATACCGAAATAAAATTCCGCTAGCGGTAAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTGTTTGTTCCCTCCGTTTCTGTTCTGGAAAAGGCAGTTGC
ATGCTTTAAAGATGTTATTTGCCGAGCAGCGGCAGTGCATGCGGAAGATAAACACAGAAAAGAGAAAGTACAGCAATTCA
GAGACGGTCAGCTTGATCTCTTAATCACAACAACAATATTAGAAAGAGGCGTCACGATTCCCAAGGTGCAAACGGGTGTA
TTAGGGGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATCGCAGGAAGAACCGGGCGGCATAAAGAGCATGC
AGACGGTGATGTCATTTTCTTTCACTACGGAAAAACAAAGAGTATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATG
CCTTGGCAGCAAAAAAAGAATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

88.478

100

0.885