Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PT671_RS09900 Genome accession   NZ_CP118021
Coordinates   2011658..2012176 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus spizizenii strain B-354     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2006658..2017176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS09880 - 2007732..2007938 (+) 207 WP_003219236.1 DUF951 domain-containing protein -
  PT671_RS09885 - 2007989..2009992 (+) 2004 WP_003219234.1 molybdopterin-dependent oxidoreductase -
  PT671_RS09890 ychF 2010119..2011219 (+) 1101 WP_003219232.1 redox-regulated ATPase YchF -
  PT671_RS09895 rpsF 2011330..2011617 (+) 288 WP_003219230.1 30S ribosomal protein S6 -
  PT671_RS09900 ssbA 2011658..2012176 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  PT671_RS09905 rpsR 2012220..2012459 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  PT671_RS09910 xth 2012520..2013278 (+) 759 WP_003219223.1 exodeoxyribonuclease III -
  PT671_RS09915 - 2013337..2014272 (+) 936 WP_003219221.1 LacI family DNA-binding transcriptional regulator -
  PT671_RS09920 - 2014328..2014708 (+) 381 WP_003219220.1 VOC family protein -
  PT671_RS09925 - 2014726..2015280 (+) 555 WP_003219218.1 sugar O-acetyltransferase -
  PT671_RS09930 - 2015313..2016668 (-) 1356 WP_003219216.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=789154 PT671_RS09900 WP_003219228.1 2011658..2012176(+) (ssbA) [Bacillus spizizenii strain B-354]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=789154 PT671_RS09900 WP_003219228.1 2011658..2012176(+) (ssbA) [Bacillus spizizenii strain B-354]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACTGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGAGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378