Detailed information NTG0789094

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: Q7260_RS07265
• Genome accession: NZ_CP131440
• Coordinates: 1370083..1371090 (+)
• Length: 335 a.a.
• NCBI ID: WP_002875259.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain S36
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1365083..1376090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q7260_RS09640	-	1366750..1367700 (-)	951	Protein_1405	autotransporter outer membrane beta-barrel domain-containing protein	-
Q7260_RS07240 (Q7260_07240)	-	1367729..1367956 (+)	228	WP_172781073.1	hypothetical protein	-
Q7260_RS07245 (Q7260_07245)	-	1367971..1368585 (-)	615	WP_002875260.1	hypothetical protein	-
Q7260_RS07250 (Q7260_07250)	-	1368554..1369021 (-)	468	WP_002860417.1	hypothetical protein	-
Q7260_RS07260 (Q7260_07260)	-	1369582..1369992 (-)	411	WP_002783915.1	hypothetical protein	-
Q7260_RS07265 (Q7260_07265)	ruvB	1370083..1371090 (+)	1008	WP_002875259.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
Q7260_RS07270 (Q7260_07270)	amaA	1371094..1372137 (+)	1044	WP_002859651.1	AI-2E family transporter	-
Q7260_RS07275 (Q7260_07275)	fumC	1372167..1373558 (-)	1392	WP_002859652.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37353.89 Da
• Isoelectric Point: 4.8396

>NTDB_id=789094 Q7260_RS07265 WP_002875259.1 1370083..1371090(+) (ruvB) [Campylobacter jejuni strain S36]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMDANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=789094 Q7260_RS07265 WP_002875259.1 1370083..1371090(+) (ruvB) [Campylobacter jejuni strain S36]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGATGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
TCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCCAAACAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.461	99.701	0.693
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.454	97.313	0.51
ruvB	Synechocystis sp. PCC 6803	49.533	95.821	0.475
ruvB	Streptococcus pneumoniae TIGR4	48.328	98.209	0.475
ruvB	Streptococcus pneumoniae R6	48.328	98.209	0.475
ruvB	Streptococcus pneumoniae D39	48.328	98.209	0.475