Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PUN35_RS17990 Genome accession   NZ_CP117986
Coordinates   3365710..3366432 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus sp. N3378-2at     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3360710..3371432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS17965 degS 3361020..3362177 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PUN35_RS17970 degU 3362260..3362949 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  PUN35_RS17975 - 3363047..3363892 (+) 846 WP_014481053.1 DegV family protein -
  PUN35_RS17980 comFA 3363999..3365390 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  PUN35_RS17985 comFB 3365450..3365746 (+) 297 WP_003227989.1 late competence protein ComFB -
  PUN35_RS17990 comFC 3365710..3366432 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  PUN35_RS17995 - 3366505..3366924 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  PUN35_RS18000 flgM 3367005..3367271 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  PUN35_RS18005 flgN 3367287..3367769 (+) 483 WP_014481048.1 flagellar protein FlgN -
  PUN35_RS18010 flgK 3367788..3369311 (+) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  PUN35_RS18015 flgL 3369322..3370218 (+) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  PUN35_RS18020 - 3370265..3370840 (+) 576 WP_014481045.1 DUF6470 family protein -
  PUN35_RS18025 fliW 3370861..3371292 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=788931 PUN35_RS17990 WP_014481051.1 3365710..3366432(+) (comFC) [Bacillus sp. N3378-2at]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=788931 PUN35_RS17990 WP_014481051.1 3365710..3366432(+) (comFC) [Bacillus sp. N3378-2at]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992