Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PUN35_RS17970 Genome accession   NZ_CP117986
Coordinates   3362260..3362949 (+) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus sp. N3378-2at     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3357260..3367949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS17945 - 3357592..3358047 (-) 456 WP_014481057.1 hypothetical protein -
  PUN35_RS17950 - 3358096..3358551 (-) 456 WP_041516563.1 hypothetical protein -
  PUN35_RS17955 - 3359158..3360150 (-) 993 WP_014481056.1 LCP family protein -
  PUN35_RS17960 - 3360150..3360803 (-) 654 WP_014481055.1 YigZ family protein -
  PUN35_RS17965 degS 3361020..3362177 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PUN35_RS17970 degU 3362260..3362949 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  PUN35_RS17975 - 3363047..3363892 (+) 846 WP_014481053.1 DegV family protein -
  PUN35_RS17980 comFA 3363999..3365390 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  PUN35_RS17985 comFB 3365450..3365746 (+) 297 WP_003227989.1 late competence protein ComFB -
  PUN35_RS17990 comFC 3365710..3366432 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  PUN35_RS17995 - 3366505..3366924 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  PUN35_RS18000 flgM 3367005..3367271 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  PUN35_RS18005 flgN 3367287..3367769 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=788929 PUN35_RS17970 WP_014481054.1 3362260..3362949(+) (degU) [Bacillus sp. N3378-2at]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=788929 PUN35_RS17970 WP_014481054.1 3362260..3362949(+) (degU) [Bacillus sp. N3378-2at]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996