Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PUN35_RS14960 Genome accession   NZ_CP117986
Coordinates   2779482..2780000 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. N3378-2at     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2774482..2785000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS14940 - 2775556..2775762 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  PUN35_RS14945 - 2775813..2777816 (+) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  PUN35_RS14950 ychF 2777943..2779043 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  PUN35_RS14955 rpsF 2779154..2779441 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  PUN35_RS14960 ssbA 2779482..2780000 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  PUN35_RS14965 rpsR 2780044..2780283 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  PUN35_RS14970 xth 2780348..2781106 (+) 759 WP_014481508.1 exodeoxyribonuclease III -
  PUN35_RS14975 - 2781166..2781555 (+) 390 Protein_2903 LacI family DNA-binding transcriptional regulator -
  PUN35_RS14980 - 2782460..2783734 (-) 1275 WP_014481505.1 MFS transporter -
  PUN35_RS14985 - 2783712..2784740 (-) 1029 WP_014481504.1 AAA family ATPase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=788920 PUN35_RS14960 WP_003219228.1 2779482..2780000(+) (ssbA) [Bacillus sp. N3378-2at]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=788920 PUN35_RS14960 WP_003219228.1 2779482..2780000(+) (ssbA) [Bacillus sp. N3378-2at]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378