Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PT602_RS13025 Genome accession   NZ_CP117968
Coordinates   2542598..2543080 (-) Length   160 a.a.
NCBI ID   WP_144163254.1    Uniprot ID   -
Organism   Allobacillus halotolerans strain BCRC 17939     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2537598..2548080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT602_RS13005 rplI 2538545..2538991 (-) 447 WP_144163258.1 50S ribosomal protein L9 -
  PT602_RS13010 - 2538988..2540961 (-) 1974 WP_216686800.1 DHH family phosphoesterase -
  PT602_RS13015 - 2541001..2541948 (-) 948 WP_216686801.1 YybS family protein -
  PT602_RS13020 rpsR 2542355..2542582 (-) 228 WP_236782619.1 30S ribosomal protein S18 -
  PT602_RS13025 ssbA 2542598..2543080 (-) 483 WP_144163254.1 single-stranded DNA-binding protein Machinery gene
  PT602_RS13030 rpsF 2543093..2543383 (-) 291 WP_144163253.1 30S ribosomal protein S6 -
  PT602_RS13035 ychF 2543520..2544620 (-) 1101 WP_144163252.1 redox-regulated ATPase YchF -
  PT602_RS13040 - 2544820..2545017 (-) 198 WP_216686802.1 DUF951 domain-containing protein -
  PT602_RS13045 - 2545117..2546142 (-) 1026 WP_216686803.1 hypothetical protein -
  PT602_RS13050 yyaC 2546215..2546778 (+) 564 WP_144163249.1 spore protease YyaC -
  PT602_RS13055 - 2546914..2547633 (-) 720 WP_144163279.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17922.75 Da        Isoelectric Point: 4.9821

>NTDB_id=788626 PT602_RS13025 WP_144163254.1 2542598..2543080(-) (ssbA) [Allobacillus halotolerans strain BCRC 17939]
MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGEREADFINCVAWRRQAENLANYMKKGSMIGVDGRIQTR
NFEGQDGKRVYITEVMAESIQFLETKGSSGQSGQGSTMANSSNNNQNFQRQTQEQSAPKSNNPFEREGEPVDLSDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=788626 PT602_RS13025 WP_144163254.1 2542598..2543080(-) (ssbA) [Allobacillus halotolerans strain BCRC 17939]
GTGTTGAATCGAGTCGTTTTAGTAGGAAGACTTACACGTGACCCAGACTTGCGTTATACCCCAAACGGTGTAGCAGTAGC
AAACTTCAATATTGCCGTAAACAGACCGTTTTCGAATCAGCAAGGAGAGCGTGAAGCGGACTTTATTAATTGTGTCGCTT
GGCGTAGACAGGCTGAAAACTTAGCAAACTACATGAAAAAAGGTAGTATGATCGGTGTCGATGGTCGAATCCAAACGCGT
AATTTTGAAGGACAAGACGGGAAGCGTGTATATATAACAGAAGTTATGGCTGAGAGCATTCAGTTCCTTGAAACAAAAGG
AAGCTCCGGTCAAAGTGGGCAAGGTTCAACCATGGCAAACTCATCGAATAACAATCAAAACTTTCAGAGACAGACACAAG
AACAGTCTGCTCCGAAAAGTAATAATCCATTTGAAAGAGAAGGCGAACCAGTCGACCTTTCAGATGACGATTTACCATTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.77

100

0.65
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.581
  ssb Glaesserella parasuis strain SC1401

34.444

100

0.387
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

66.25

0.381